GitHub topics: langevin-dynamics

Repositories

soran-ghaderi/torchebm

⚡ Energy-Based Modeling library for PyTorch, offering tools for sampling, inference, and learning in complex distributions.

Language: Python - Size: 32.2 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 7 - Forks: 1

enhuiz/langevin-dynamics-and-score-matching

A demo shows how to combine Langevin dynamics with score matching for generative models.

Language: Python - Size: 23.9 MB - Last synced at: 4 days ago - Pushed at: over 4 years ago - Stars: 38 - Forks: 4

pfh/langevitour

Langevin dynamics based tours of data, in Javascript with R wrapper.

Language: TypeScript - Size: 2.26 MB - Last synced at: 2 days ago - Pushed at: 15 days ago - Stars: 26 - Forks: 2

DanielCortild/Global-Optimization

A package to solve global optimization problems in small dimensions. The method is based on sampling algorithms, and specifically implements the high-resolution Langevin algorithm.

Language: Python - Size: 13.4 MB - Last synced at: 11 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

JavierAntoran/Bayesian-Neural-Networks

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

Language: Jupyter Notebook - Size: 15.6 MB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 1,889 - Forks: 305

ekzhang/langevin-music

Noise-conditional score networks for music composition by annealed Langevin dynamics

Language: Python - Size: 76.2 KB - Last synced at: 18 days ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 2

lcec-unb/simmsus

Numerical simulation of magnetic particles

Language: Fortran - Size: 29.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

godisreal/CrowdEgress

Agent-based simulation of social interaction (Social Force Model and Self-Propelled Brownian Particles)

Language: Python - Size: 12.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 0

tmbeardsley/lfts_cpu

Langevin Field-Theoretic Simulations (L-FTS) of Diblock Copolymers on CPUs (https://www.tbeardsley.com/projects/lfts/fts_gpu)

Language: C++ - Size: 1.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

langevinmodel/folie

Finding Optimal Langevin Inferred Equations

Language: Python - Size: 24.4 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 5 - Forks: 1

nandahkrishna/RNNReactivation

Code for "Sufficient conditions for offline reactivation in recurrent neural networks" (ICLR 2024)

Language: Python - Size: 34.2 KB - Last synced at: 16 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0

vita-epfl/CODE

Implementation of CODE: Confident Ordinary Differential Editing

Language: Jupyter Notebook - Size: 230 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 0

achattaraj/CondensateMerger

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

Language: Jupyter Notebook - Size: 464 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

The code enables to perform Bayesian inference in an efficient manner through the use of Hamiltonian Neural Networks (HNNs), Deep Neural Networks (DNNs), Neural ODEs, and Symplectic Neural Networks (SympNets) used with state-of-the-art sampling schemes like Hamiltonian Monte Carlo (HMC) and the No-U-Turn-Sampler (NUTS).

Language: Python - Size: 1.78 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 14 - Forks: 6

tmbeardsley/lfts_gpu

Langevin Field-Theoretic Simulation of Diblock Copolymers on the GPU (https://www.tbeardsley.com/projects/lfts/fts_gpu)

Language: C++ - Size: 855 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

zaman13/Brownian-dynamics-in-a-time-varying-force-field

A python code to calculate the Brownian motion of colloidal particles in a time varying force field.

Language: Python - Size: 3.52 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 19 - Forks: 4

tmbeardsley/wtmd_lfts_cpu

Well-tempered metadynamics applied to Langevin field-theoretic simulations of diblock copolymers on CPUs (https://www.tbeardsley.com/projects/lfts/wtmd)

Language: C++ - Size: 818 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

tmbeardsley/clfts_gpu

Complex Langevin Field-Theoretic Simulations on GPUs (https://www.tbeardsley.com/projects/lfts/clfts_gpu)

Language: C++ - Size: 9.94 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

tmbeardsley/wtmd_lfts_gpu

Well-tempered metadynamics applied to Langevin field-theoretic simulations of diblock copolymers on the GPU (https://www.tbeardsley.com/projects/lfts/wtmd)

Language: C++ - Size: 5.19 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

jung235/pydiffuser

A simulation framework for nonequilibrium statistical physics

Language: Python - Size: 418 KB - Last synced at: 14 days ago - Pushed at: 9 months ago - Stars: 8 - Forks: 0

alan-turing-institute/ThermodynamicAnalyticsToolkit

Sampling-based approach to analyse neural networks using TensorFlow

Language: Python - Size: 13.7 MB - Last synced at: 6 days ago - Pushed at: about 6 years ago - Stars: 22 - Forks: 3

haoyangzheng1996/r2SGLD

The GitHub repository for "Constrained Exploration via Reflected Replica Exchange Stochastic Gradient Langevin Dynamics", ICML 2024

Language: Python - Size: 51.8 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 1

ARenanse/LGPT

Langevin Gradient Parallel Tempering for Bayesian Neural Learning.

Language: Jupyter Notebook - Size: 242 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 3 - Forks: 0

achattaraj/ClusterFusion

Language: Jupyter Notebook - Size: 192 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

haoyangzheng1996/ts_ulmc

The GitHub repository for "Accelerating Approximate Thompson Sampling with Underdamped Langevin Monte Carlo", AISTATS 2024.

Language: Python - Size: 56.6 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 4 - Forks: 0

juliankappler/PySTFP

Python module for (symbolic) evaluation of the short-time Fokker-Planck propagator to arbitrary accuracy

Language: Python - Size: 354 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

pvkostryukov/FEL3D

This code calculates 3D system of Langevin equations describing behaviour of nuclear shape during fission process

Language: Roff - Size: 66.1 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

panxulab/LSVI-ASE

The official code release for "More Efficient Randomized Exploration for Reinforcement Learning via Approximate Sampling", Reinforcement Learning Conference (RLC) 2024

Language: Python - Size: 16.4 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

achattaraj/OptimalCondensateSize

Multi-condensate state as a functional strategy to optimize the cell signaling output

Language: Jupyter Notebook - Size: 346 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

apallath/pyves

Variationally enhanced sampling for single-particle langevin dynamics with neural network bias potentials and path collective variables. Based on OpenMM + PyTorch.

Language: Python - Size: 101 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

gianpd/brownian_dynamics

Langevin equation MD integration

Language: Jupyter Notebook - Size: 52.5 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0

choderalab/integrator-benchmark

Code for enumerating and evaluating numerical methods for Langevin dynamics using near-equilibrium estimates of the KL-divergence. Accompanies https://doi.org/10.3390/e20050318

Language: Jupyter Notebook - Size: 31.9 MB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 11 - Forks: 3

bogdan-tanygin/espresso-ffans Fork of espressomd/espresso

A fork of ESPResSo by Bogdan Tanygin

Language: C++ - Size: 149 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

juliankappler/PyTubular

Python module for the evaluation of probability densities and exit rates in a tubular ensemble

Language: Python - Size: 545 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

SHI-Yu-Zhe/generative-modeling-explained

Ying Nian Wu's UCLA Statistical Machine Learning Tutorial on generative modeling.

Size: 992 KB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 43 - Forks: 7

konstantinos-p/Bayesian-Neural-Networks-Reading-List

A primer on Bayesian Neural Networks. The aim of this reading list is to facilitate the entry of new researchers into the field of Bayesian Deep Learning, by providing an overview of key papers. More details: "A Primer on Bayesian Neural Networks: Review and Debates"

Size: 82 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 29 - Forks: 2

HadrienNU/LangevinIntegrators.jl

A set of integrators for the Langevin equation.

Language: Julia - Size: 725 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

gohsyi/face_recognization_detection

Course project for SJTU CS385: Machine Learning, advised by Prof. Quanshi Zhang, where I implemented many algorithms from scratch for face recognization and detection.

Language: Jupyter Notebook - Size: 3.57 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1

PastaFosil/Phage-bacteria-simulation

Langevin dynamics simulation of bacteriophage-bacteria interaction

Language: Python - Size: 66.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

bahjat-kawar/snips_torch

[NeurIPS 2021] SNIPS: Solving Noisy Inverse Problems Stochastically

Language: Python - Size: 31.3 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 42 - Forks: 4

Unique-Divine/Langevin-Dynamics-for-NN-Optimization

Bayesian Neural Network (BNN) implementations based on Langevin Dynamics and tested on real-world data

Language: Python - Size: 3.68 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

arthurfaria/FT-work_Gaussian_Langevin_dynamics

Algorithm for simulating Langevin dynamics and to calculate numerically the work fluctuation theorem.

Language: Jupyter Notebook - Size: 260 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

achattaraj/maximal_Solubility_product

Python scripts to analyze and visualize the data presented in the research article: "The maximum solubility product marks the threshold for condensation of multivalent biomolecules".

Language: Jupyter Notebook - Size: 242 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

xif-fr/BrownianMotion

Simulation of a particle in a 2D Lennard-Jones gas for studying brownian motion, the Langevin equation, and non-equilibrium fluctuation-dissipation relations. Langevin simulation for studying first passage time, survival probabilities under various resetting schemes.

Language: Jupyter Notebook - Size: 16.1 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

langevin-dynamics 50 bayesian-inference 5 physics-simulation 5 polymer 5 pytorch 5 field-theory 5 field-theoretic-simulations 5 diblock-copolymer 5 deep-learning 4 molecular-dynamics 4 sampling-methods 4 variational-inference 4 llps 4 diffusion 4 brownian-dynamics 4 simulation 4 physics 4 brownian-motion 3 python 3 bayesian-neural-networks 3 stochastic-processes 3 optimization 3 langevin-mc 3 lammps 3 neural-networks 3 score-matching 3 uncertainty-neural-networks 2 uncertainty 2 thompson-sampling 2 sgld 2 phase-transition 2 condensates 2 langevin 2 gpu-acceleration 2 biophysics 2 self-propelled-particles 2 phase-separation 2 sampling 2 diffusion-models 2 energy-based-model 2 openmm 2 monte-carlo 2 stochastic-differential-equations 2 machine-learning 2 wtmd 2 well-tempered-metadynamics 2 approximate-inference 2 bayes-by-backprop 2 hmc 2 kronecker-factored-approximation 2 local-reparametrization-trick 2 biomolecular-condensates 2 mcmc 2 exploration-exploitation 2 reproducible-research 2 signaling-condensates 1 reaction-diffusion 1 systems-biology 1 ode-model 1 vcell 1 enhanced-sampling 1 deep-neural-networks 1 magnetic-particles 1 thermodynamics 1 replica-exchange 1 sgmcmc 1 bayesian-deep-learning 1 multiprocessing 1 parallel-computing 1 parallel-tempering 1 posterior-distributions 1 coalescence 1 multi-armed-bandit 1 fokker-planck 1 fokker-planck-equation 1 propagator 1 transition-density 1 fission 1 nuclei 1 reinforcement-learning 1 multiple-condensates 1 stochastic-gradient-descent 1 fluctuation-theorems 1 gaussian-processes 1 stochastic-simulation 1 bionetgen 1 data-analysis-python 1 data-visualisation 1 molclustpy 1 molecular-simulation 1 multivalent-clustering 1 nfsim 1 rule-based-modeling 1 springsalad 1 julia-language 1 nsf-grant-che-1738979 1 probabilistic-bisection 1 stability-threshold 1 surface-modeling 1 article 1