GitHub topics: graphical-models

Repositories

muxitox/Dynamical-MF-Self-Attention

This repository contains the code to reproduce the experiments performed in the Dynamical Mean-Field Theory of Self-Attention Neural Networks article.

Language: Python - Size: 64.9 MB - Last synced at: about 7 hours ago - Pushed at: about 8 hours ago - Stars: 4 - Forks: 0

skggm/skggm

Scikit-learn compatible estimation of general graphical models

Language: Python - Size: 8.62 MB - Last synced at: 4 days ago - Pushed at: 6 days ago - Stars: 246 - Forks: 45

Wang-ML-Lab/interpretable-foundation-models

[ICML 2024] Probabilistic Conceptual Explainers (PACE): Trustworthy Conceptual Explanations for Vision Foundation Models

Language: Python - Size: 52.7 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 15 - Forks: 3

stecrotti/BeliefPropagation.jl

The Belief Propagation approximation for probability distributions on sparse graphs

Language: Julia - Size: 1.03 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 24 - Forks: 0

rhayes777/PyAutoFit

PyAutoFit: Classy Probabilistic Programming

Language: Python - Size: 26 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 64 - Forks: 12

cran-task-views/GraphicalModels

CRAN Task View: Empirical Graphical Models

Size: 20.5 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 2 - Forks: 2

eclipse-glsp/glsp

Graphical language server platform for building web-based diagram editors

Language: TypeScript - Size: 850 KB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 214 - Forks: 32

DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

Language: Python - Size: 708 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 7,521 - Forks: 965

eclipse-glsp/glsp-client

Web-based client framework of the graphical language server platform

Language: TypeScript - Size: 4.06 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 48 - Forks: 31

krashkov/Belief-Propagation

Overview and implementation of Belief Propagation and Loopy Belief Propagation algorithms: sum-product, max-product, max-sum

Language: Jupyter Notebook - Size: 877 KB - Last synced at: 11 days ago - Pushed at: almost 6 years ago - Stars: 165 - Forks: 47

BESSER-PEARL/BESSER-Web-Modeling-Editor Fork of ls1intum/Apollon

B-UML Graphical Modeling Editor written in React

Language: TypeScript - Size: 12.2 MB - Last synced at: about 9 hours ago - Pushed at: about 9 hours ago - Stars: 8 - Forks: 2

SPFlow/SPFlow

Sum Product Flow: An Easy and Extensible Library for Sum-Product Networks

Language: Python - Size: 125 MB - Last synced at: 12 days ago - Pushed at: 21 days ago - Stars: 299 - Forks: 80

felixleopoldo/benchpress

Scalable open-source software to run, develop, and benchmark causal discovery algorithms

Language: Python - Size: 123 MB - Last synced at: 20 days ago - Pushed at: 21 days ago - Stars: 69 - Forks: 19

OpenMx/OpenMx

Repository for the OpenMx Structural Equation Modeling package

Language: R - Size: 34 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 89 - Forks: 36

kevinsbello/dagma

A Python 3 package for learning Bayesian Networks (DAGs) from data. Official implementation of the paper "DAGMA: Learning DAGs via M-matrices and a Log-Determinant Acyclicity Characterization"

Language: Python - Size: 675 KB - Last synced at: 9 days ago - Pushed at: over 1 year ago - Stars: 119 - Forks: 21

adityadua24/robopy

Robopy is a python port for Robotics Toolbox in Matlab created by Peter Corke

Language: Python - Size: 10.2 MB - Last synced at: 16 days ago - Pushed at: over 4 years ago - Stars: 226 - Forks: 47

bips-hb/CVN

Covariate-varying Networks

Language: R - Size: 8.8 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 0

thu-ml/zhusuan

A probabilistic programming library for Bayesian deep learning, generative models, based on Tensorflow

Language: Python - Size: 1.75 MB - Last synced at: 23 days ago - Pushed at: over 2 years ago - Stars: 2,222 - Forks: 419

eclipse-glsp/glsp-theia-integration

Integration of the web-based GLSP client with Eclipse Theia

Language: TypeScript - Size: 2.83 MB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 22 - Forks: 21

junipertcy/functional-connectivity

Sensing the functional connectivity of the brain

Language: Python - Size: 3.7 MB - Last synced at: 6 days ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1

eclipse-glsp/glsp-server-node

Node-based server framework of the graphical language server platform

Language: TypeScript - Size: 1.22 MB - Last synced at: 28 days ago - Pushed at: 3 months ago - Stars: 17 - Forks: 13

Duntrain/dagrad

dagrad is a Python package that provides an extensible, modular platform for developing and experimenting with differentiable (gradient-based) structure learning methods.

Language: Python - Size: 2.91 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 1

Mogeng/IOHMM

Input Output Hidden Markov Model (IOHMM) in Python

Language: Python - Size: 1.03 MB - Last synced at: 9 days ago - Pushed at: about 1 year ago - Stars: 167 - Forks: 36

noclew/pgmpy Fork of pgmpy/pgmpy

Python Library for learning (Structure and Parameter) and inference (Probabilistic and Causal) in Bayesian Networks.

Language: Python - Size: 13.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

IngoScholtes/pathpy

pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models

Language: Python - Size: 828 KB - Last synced at: 28 days ago - Pushed at: about 5 years ago - Stars: 146 - Forks: 29

jeff-regier/Celeste.jl

Scalable inference for a generative model of astronomical images

Language: Jupyter Notebook - Size: 12.5 MB - Last synced at: about 2 months ago - Pushed at: almost 4 years ago - Stars: 185 - Forks: 28

autonlab/auton-survival

Auton Survival - an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Events

Language: Python - Size: 27.6 MB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 338 - Forks: 78

m-clark/sem

:white_medium_small_square: <- :white_circle: Structural Equation Modeling from a broader context.

Language: R - Size: 58.3 MB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 31 - Forks: 18

mauroflorez/BMGM

An R package for Bayesian inference on graphical models with mixed data types (continuous, discrete, categorical, and zero-inflated)

Language: R - Size: 469 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

fabian-sp/GGLasso

A Python package for General Graphical Lasso computation

Language: Python - Size: 122 MB - Last synced at: 5 days ago - Pushed at: 4 months ago - Stars: 35 - Forks: 14

anskarl/LoMRF

LoMRF is an open-source implementation of Markov Logic Networks

Language: Scala - Size: 17.5 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 84 - Forks: 18

QuantumLeaps/qm

Graphical modeling and code generation tool based on UML state machines

Language: Shell - Size: 139 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 151 - Forks: 39

eclipse-glsp/glsp-server

Java-based server framework of the graphical language server platform

Language: Java - Size: 1.44 MB - Last synced at: 27 days ago - Pushed at: 2 months ago - Stars: 39 - Forks: 28

FranxYao/Deep-Generative-Models-for-Natural-Language-Processing

DGMs for NLP. A roadmap.

Size: 32 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 390 - Forks: 32

gleday/beam

Fast Bayesian Inference in Large Graphical Models

Language: R - Size: 312 KB - Last synced at: 4 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 1

jluttine/junction-tree

The junction tree algorithm for (discrete) factor graphs

Language: Python - Size: 307 KB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 18 - Forks: 5

gleday/ShrinkNet

Gene network reconstruction using global-local shrinkage priors

Language: C++ - Size: 11.7 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 4 - Forks: 0

rythm-net/Paint-Project

Course Project (Discipline - Computer graphics - 3rd Year, 2nd Semester)

Language: C# - Size: 8.49 MB - Last synced at: 29 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ihler/pyGMs

Python toolbox for graphical models

Language: Jupyter Notebook - Size: 2.39 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 17 - Forks: 8

mschauer/Mitosis.jl

Automatic probabilistic programming for scientific machine learning and dynamical models

Language: Julia - Size: 354 KB - Last synced at: 8 days ago - Pushed at: 12 months ago - Stars: 35 - Forks: 3

nicholasjclark/MRFcov

Markov random fields with covariates

Language: R - Size: 3.51 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 23 - Forks: 5

BorealisAI/private-data-generation

A toolbox for differentially private data generation

Language: Python - Size: 60.5 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 131 - Forks: 32

scollinspt/Models4PT

A graphical causal modeling tool tailored for physical therapy research and clinical reasoning. Part of the Clinical Inquiry Network ecosystem.

Size: 2.16 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

ermongroup/SPN_Variational_Inference

PyTorch implementation for "Probabilistic Circuits for Variational Inference in Discrete Graphical Models", NeurIPS 2020

Language: Python - Size: 1.45 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 17 - Forks: 2

D-K-E/graphical-models

Probabilistic Graphical Models from Scratch with support for LWF Chain Graphs

Language: Python - Size: 2.86 MB - Last synced at: 5 days ago - Pushed at: 10 months ago - Stars: 6 - Forks: 2

MarineRoboticsGroup/dcsam

Factored inference for discrete-continuous smoothing and mapping.

Language: C++ - Size: 4.34 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 146 - Forks: 18

andreacasalino/Easy-Factor-Graph

General purpose C++ library for managing discrete factor graphs

Language: C++ - Size: 17.9 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 36 - Forks: 4

Billy1900/Awesome-Machine-Learning

Learning tutorial for machine learning beginners

Size: 10.9 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 13 - Forks: 0

lanl-ansi/GraphicalModelLearning.jl

Algorithms for Learning Graphical Models

Language: Julia - Size: 235 KB - Last synced at: 24 days ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 10

felixleopoldo/cslearn

CStrees: context-specific graphical models

Language: Jupyter Notebook - Size: 5.31 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 4 - Forks: 0

eclipse-glsp/glsp-examples

Example diagram editors built with Eclipse GLSP

Language: TypeScript - Size: 10.4 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 46 - Forks: 31

sqyu/genscore

Generalized Score Matching

Language: R - Size: 3.04 MB - Last synced at: 16 days ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 2

fdtomasi/regain

REGAIN (Regularised Graphical Inference)

Language: Jupyter Notebook - Size: 52.6 MB - Last synced at: 7 days ago - Pushed at: almost 2 years ago - Stars: 29 - Forks: 13

bips-hb/tpc

tPC - Causal discovery with temporal background

Language: R - Size: 4.65 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 5 - Forks: 0

bips-hb/micd

Multiple Imputation in Causal Graph Discovery

Language: R - Size: 342 KB - Last synced at: 12 days ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 0

hadoov/GHRS

GHRS: Graph-based hybrid recommendation system with application to movie recommendation

Language: Python - Size: 9.65 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 34 - Forks: 13

cbg-ethz/SGS

Inference in Bayesian Networks with R

Language: R - Size: 5.21 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 11 - Forks: 2

eclipsesource/graphical-lsp 📦

Graphical language server platform for building web-based diagram editors

Language: Java - Size: 23 MB - Last synced at: 7 months ago - Pushed at: over 5 years ago - Stars: 38 - Forks: 8

ostwalprasad/LGNpy

Linear Gaussian Bayesian Networks - Inference, Parameter Learning and Representation. 🖧

Language: Python - Size: 702 KB - Last synced at: 24 days ago - Pushed at: almost 3 years ago - Stars: 36 - Forks: 8

alan-turing-institute/grace

Graph Representation Analysis for Connected Embeddings

Language: Jupyter Notebook - Size: 60.5 MB - Last synced at: about 2 months ago - Pushed at: 8 months ago - Stars: 34 - Forks: 1

cbil-vt/DDN3

Differential Dependency Network

Language: Python - Size: 705 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

Duntrain/TOPO

Optimizing NOTEARS Objectives via Topological Swaps

Language: Python - Size: 57.6 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 5 - Forks: 3

LeviBorodenko/dgcnn

Clean & Documented TF2 implementation of "An end-to-end deep learning architecture for graph classification" (M. Zhang et al., 2018).

Language: Python - Size: 225 KB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 24 - Forks: 3

itsrainingdata/sparsebn

Software for learning sparse Bayesian networks

Language: R - Size: 2.84 MB - Last synced at: 3 months ago - Pushed at: almost 5 years ago - Stars: 43 - Forks: 8

olgakuznetsova/LogconcaveGraphical

Code for the arXiv preprint:2206.05227

Language: R - Size: 986 KB - Last synced at: 4 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

nanguoshun/StatNLP-Framework

C++ based implementation of StatNLP framework

Language: C++ - Size: 15 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 17 - Forks: 2

chinghao0703/biocompdesign

Language: Python - Size: 64.5 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

uhlerlab/graphical_models

Implementations of common graphical models, utilities for creating random graphs, and sampling from graphical models.

Language: HTML - Size: 6.56 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 4

kimitsuki4/Maxon-CINEMA-4D-Latest-version-for-free

Size: 8.79 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 136 - Forks: 0

maaario/unsupervised-image-translation

A re-implementation of a paper which uses graphical models for transferring style between images as my final project for course Graphical Models in Machine Learning, spring 2017.

Language: Python - Size: 5.43 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

clinicalml/dmm

Deep Markov Models

Language: Jupyter Notebook - Size: 9.85 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 122 - Forks: 33

baptistar/SING

Learning non-Gaussian graphical models

Language: Python - Size: 44.9 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

bbboll/geogm

Image labeling with graphical models

Language: C++ - Size: 3.1 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

DataForScience/PyData2020

Why And What If: Causal Inference for Everyone

Language: Jupyter Notebook - Size: 22.6 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 18 - Forks: 4

meijun/maxspn

MAX SPN

Language: Go - Size: 4.49 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

Nuno-Jesus/FEUP-CGRA

Projects and TPs developed at Graphical Computation at FEUP in 2020/2021

Language: HTML - Size: 22 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

wf8/RevBayes_UC_Berkeley_2018_Workshop

UC Berkeley 2018 RevBayes Workshop: Phylogenetic graphical models and Bayesian inference

Language: TeX - Size: 2.03 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 3

mnarayan/ggmClass

A matlab class for ggm estimation

Language: Matlab - Size: 878 KB - Last synced at: 4 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

quillan86/impactflow

ImpactFlow is a Python Library for decision modeling based on causal decision models - in which levers and external factors of decisions feed into outcomes.

Language: Python - Size: 101 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

vsimkus/pmr2024-pgm-demo

An official repository for a PGM demo of Probabilistic Modelling and Reasoning (2023/2024) - a University of Edinburgh master's course.

Language: Jupyter Notebook - Size: 470 KB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 3

jhlinplus/MultiLayerGGM

Official code repository for "Penalized MLE of multi-layer Gaussian Graphical models"

Language: R - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2

richardkwo/InvariantCausal.jl

Causal Inference with Invariant Prediction

Language: Julia - Size: 2.15 MB - Last synced at: 5 months ago - Pushed at: over 4 years ago - Stars: 25 - Forks: 3

alan-turing-institute/PDSampler.jl 📦

Piecewise Deterministic Sampler library (Bouncy particle sampler, Zig Zag sampler, ...)

Language: Julia - Size: 12.1 MB - Last synced at: 1 day ago - Pushed at: over 4 years ago - Stars: 33 - Forks: 8

magnusneuman/Modular-GLASSO

Code for the paper "Module-based regularization improves Gaussian graphical models when observing noisy data"

Language: Jupyter Notebook - Size: 1.87 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Zeta-Project/zeta

Modeling tool for generating graphical modeling environments.

Language: Scala - Size: 20.8 MB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 16 - Forks: 4

hauserrg/GraphicalGuidelines

Graphical Guideline Analysis - Supplement to Manuscript

Language: C# - Size: 22.5 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

FranxYao/RDP

Implementation of ICML 22 Paper: Scaling Structured Inference with Randomization

Language: Jupyter Notebook - Size: 115 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 14 - Forks: 3

netw0rkf10w/CRF

Conditional Random Fields

Language: Python - Size: 88.9 KB - Last synced at: 8 months ago - Pushed at: about 3 years ago - Stars: 23 - Forks: 2

tum-vision/lgm

Implementation of Layered Graphical Model with demo code

Language: Python - Size: 53.7 KB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 3

UBGewali/tutorial-UGM-hyperspectral

A Tutorial on Modeling and Inference in Undirected Graphical Models for Hyperspectral Image Analysis

Language: Matlab - Size: 33.2 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 21 - Forks: 9

nicholasjclark/Mediterranean-Fishes-MRF

R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)

Language: R - Size: 36.1 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 2