epistorm/epydemix

epydemix, the ABC of epidemics

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zephyralistair/vPET-ABC-fast-PET-kinetic-modelling-on-large-data

This repo contains code that implements vPET-ABC. Currently, we have included Python code attempting GPU acceleration on FDG compartment models.

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tillahoffmann/summaries2

Language: Python - Size: 526 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

onnela-lab/summaries

Unifying Summary Statistic Selection for Approximate Bayesian Computation

Language: Python - Size: 768 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

arrjon/CellMigration

Simulation-Based Inference of Cell Migration Dynamics

Language: Jupyter Notebook - Size: 1.9 GB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 1

Plant-Food-Research-Open/calisim

A toolbox for the calibration and evaluation of simulation models.

Language: Python - Size: 7.15 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 16 - Forks: 2

emune-dev/Cell-Migration-Complex-Environments Fork of arrjon/CellMigration

Simulation-Based Inference of Cell Migration Dynamics

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Plant-Food-Research-Open/calisim-examples-workshop-material

Workshop for calisim: A toolbox for the calibration and evaluation of simulation models.

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mauricelanghinrichs/ABCdeZ.jl

Approximate Bayesian Computation (ABC) with differential evolution (de) moves and model evidence (Z) estimates.

Language: Julia - Size: 932 KB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 13 - Forks: 1

dirmeier/sbijax

Simulation-based inference in JAX

Language: Python - Size: 25.4 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 35 - Forks: 4

massimilianotamborrino/SMCABCnJRNMM

SMC-ABC for network inference, illustrated on N populations of the JRNMMs

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JBris/deep-root-gen

A simulation model for the digital reconstruction of 3D root system architectures. Integrated with a simulation-based inference generative deep learning model.

Language: Python - Size: 4.71 MB - Last synced at: about 2 months ago - Pushed at: 12 months ago - Stars: 4 - Forks: 1

Eawag-SIAM/SimulatedAnnealingABC.jl

Approximate Bayesian Computation algorithm based on simulated annealing

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florent-leclercq/Bayes_InfoTheory

Lectures on Bayesian statistics and information theory

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Quetzal-framework/quetzal-CoaTL

A toolbox for C++ devs wanting to build geospatial population genetics simulators !

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JBris/likelihood_free_hyperpriors_test

Testing out hyper-priors for likelihood-free methods

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akpanitorobong/7089CEM-Statistical_Methods_For_Data_Science

CW Code and Dataset for SMDS module at Coventry University. Applied Nonlinear Regression and Bayesian Inference techniques to analyze MEG brain responses from a simulated neuromarketing experiment. The project demonstrates proficiency in modeling complex biological signals and estimating parameter uncertainty using Approximate Bayesian Computation

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americocunhajr/CE-ABC

CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.

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florent-leclercq/lotkavolterra_simulator

Simulator of the Lotka-Volterra prey-predator system with demographic and observational noise and biases

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JBris/model-calibration-evaluation

Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference

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isaacovercast/gimmeSAD

Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.

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ngozzi/epydemix

epydemix, the ABC of epidemics

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NisanurBulut/MatlabImageProcessing

Adding Noise Noise Canceling Image resizing Resolution Study Filtering processes -Midic filter -Mean filter -Laplasian filter Photo Sharpening

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jaspervrugt/DREAM-Suite

DiffeRential Evolution Adaptive Metropolis algorithm: MATLAB and Python Toolbox

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jaspervrugt/ABC-PMC

Approximation Bayesian Computation: Population Monte Carlo in MATLAB and Python

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AstraBert/diyabc-support-tutorial

DIYABC support tutorial from my experience

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florent-leclercq/pyselfi

Simulator Expansion for Likelihood-Free Inference (SELFI): a python implementation

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szrlee/HyperAgent

The official code repo for HyperAgent algorithm published in ICML 2024.

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diyabc/abcranger

ABC random forests for model choice and parameter estimation, pure C++ implementation

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nifleisch/approximate-bayesian-computation

Application of rejection sampling and markov chain monte carlo (MCMC) algorithms to approximate bayesian computation (ABC). The project includes application of ABC to model the pharmacokinetics of theophylline.

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Adolphus8/Approximate_Bayesian_Computation

Repository on Approximate Bayesian Computation and the different distance metrics which can be implemented.

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SourabhKul/ABC-COVID-19-GPU-TPU

GPU and TPU implementation of parallelized ABC inference for a stochastic epidemiology model for COVID-19

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sparklyworm/4YP

4th Year Project - Optimal Control of Directed Evolution

Language: MATLAB - Size: 9.02 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

francescoalemanno/KissABC.jl

Pure julia implementation of Multiple Affine Invariant Sampling for efficient Approximate Bayesian Computation

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QuanticPony/Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment

Trabajo de Fin de Grado de Física 2022

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alex-schaaf/ABCsampler

Simple model class and non-vectorized samplers for Approximate Bayesian Statistics (ABC)

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mqcase1004/Tukey-Depth-ABC

Efficient Estimation of Generative Models using Tukey Depth

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diyabc/diyabcGUI

User interface to DIYABC/AbcRanger

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bgautijonsson/bggjphd

An R package to go along with my PhD research

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JuliaApproxInference/LikelihoodfreeInference.jl

Likelihood-Free Inference for Julia.

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ocbe-uio/elfi Fork of elfi-dev/elfi

A Python package for likelihood-free inference (LFI) methods such as Approximate Bayesian Computation (ABC)

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JuliaEpi/MathepiaInference.jl

Bayesian inference tools. Including state-of-the-art inference methods: HMC family, ABC family, Data assimilation, and so on. Part of Mathepia.jl

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tillahoffmann/summaries

Comparison of summary statistic selection methods with a unifying perspective.

Language: Python - Size: 229 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

compops/gpo-smc-abc

Bayesian optimisation for fast approximate inference in state-space models with intractable likelihoods

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AnthonyEbert/protoABC

R-package protoABC: Flexible approach to Approximate Bayesian Computation (ABC)

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alex-schaaf/abc-geomodeling

Figuring out how Approximate Bayesian Computation works and how it can be applied to geological modeling.

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Serock3/TIF345-Advanced-simulation-and-machine-learning

Repo for projects in the Chalmers course "TIF345 / FYM345 Advanced simulation and machine learning" 2020. Authors: Sebastian Holmin and Erik Andersson

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diyabc/MER_publication_materials

Publication Materials for "Extending Approximate Bayesian Computation with Supervised Machine Learning to Infer Demographic History from Genetic Polymorphisms Using DIYABC Random Forest" in *Molecular Ecology Resources* special issue

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ocramz/bayesian-inference

Language: Haskell - Size: 113 KB - Last synced at: 7 months ago - Pushed at: almost 6 years ago - Stars: 7 - Forks: 1

florent-leclercq/correlations_vs_field

Correlation functions versus field-level inference in cosmology: example with log-normal fields

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neuralyzer/pyabc

pyABC: distributed, likelihood-free inference

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SamuelWiqvist/ApproximateBayesianComputation.jl

Julia implementation of some ABC algorithms.

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tomshafer/bcf

Simulate N-player competitions via Approximate Bayesian Computation

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