vegandevs/vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

Language: R - Size: 462 MB - Last synced: about 6 hours ago - Pushed: about 7 hours ago - Stars: 426 - Forks: 94

anjalisadanandanp/abm-elephant-project

An Agent-Based Model of Elephant Crop Raid Dynamics in the Periyar-Agasthyamalai Complex, India

Language: Python - Size: 303 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 0 - Forks: 1

Deltares/D-EcoImpact

A Python based kernel to perform spatial (environmental) impact assessment

Language: Python - Size: 38.1 MB - Last synced: about 12 hours ago - Pushed: 2 days ago - Stars: 5 - Forks: 0

nationalparkservice/HTLN-fish-cecr

Climate exposure and climate response in fish communities

Size: 5.86 KB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 0

HijoBejuco/dynamical-systems-modeling

🌀🌿 This repo explores the theory of complex systems and how to use it for modeling real world nature systems such as forests.

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Ely-S/ODEtoJS

Simulates systems of Ordenary Differential Equations in your browser. Compatible with Stella files.

Language: CSS - Size: 1.38 MB - Last synced: 13 days ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

stangandaho/nimo

A Graphical User Interface-Based R Package for Species Distribution Modeling

Language: HTML - Size: 1.75 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 1

nicholasjclark/physalia-forecasting-course

Ecological forecasting with R 📦's {mvgam} and {brms}

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nicholasjclark/mvgam

{mvgam} R 📦 to fit Dynamic Bayesian Generalised Additive Models for time series analysis and forecasting

Language: R - Size: 483 MB - Last synced: 30 days ago - Pushed: about 1 month ago - Stars: 78 - Forks: 10

ConFooBio/gmse

An R package for simulating Generalised Management Strategy Evaluation

Language: TeX - Size: 283 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 10 - Forks: 5

vaishnu7/Riparian-Invertebrates-Agriculture-Model

This is the code used in the article "Implications of Agricultural Practices on Vegetation and Terrestrial Invertebrates in Riparian Zone: A Nonlinear Modelling Study"

Language: TeX - Size: 667 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

valentinitnelav/bootstrapnet

R package for bootstrapping indices of bipartite ecological networks

Language: R - Size: 5.67 MB - Last synced: 11 days ago - Pushed: about 1 year ago - Stars: 4 - Forks: 2

gemmagerber/autoLIMR

Automated Translation of Network Data into Declaration Files Compatible with LIM and limSolve

Language: R - Size: 3.05 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 1

florent-leclercq/lotkavolterra_simulator

Simulator of the Lotka-Volterra prey-predator system with demographic and observational noise and biases

Language: Jupyter Notebook - Size: 861 KB - Last synced: 12 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

palmaraz/GuadalShiftR

Exploring tipping points, catastrophic bifurcations and alternative stable states in the Guadalquivir marshes

Language: TeX - Size: 53.5 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

mjg211/phaseR

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

Language: R - Size: 2.38 MB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 15 - Forks: 3

ben1post/phydra

Phydra is a python package for flexible and reproducible marine ecosystem modelling, using the Xarray-simlab-ODE Framework

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BLayman/Artificial-Life-Simulator

An ecologically inspired multi-agent system. Agents are designed with neural network based decision making, and complex resource requirements.

Language: C# - Size: 44.3 MB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 44 - Forks: 4

rudeboybert/SDS390

Smith College SDS390 Ecological Forecasting

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atsa-es/atsa

Applied Time Series Analysis - course website repository.

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LEEClab/LS_CORRIDORS

Simulation of multiple ecological functional corridors

Language: Python - Size: 55.2 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 23 - Forks: 12

atredennick/modselr

Data and function bundle for model selection guide for ecologists

Language: R - Size: 1.46 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

PredictiveEcology/LandR

Landscape Ecosystem Modelling in R

Language: R - Size: 6.86 MB - Last synced: about 12 hours ago - Pushed: 3 days ago - Stars: 16 - Forks: 7

faizee-ali/ElevationalMigration

This is an ongoing project on Characterizing, calculating and understanding(the drivers of) Elevational Migration of resient birds in the southern western Ghats.

Language: R - Size: 25.6 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

FelixNoessler/RegionalGrasslandSim.jl

Simulation model of the biomass of grassland plant species

Language: Julia - Size: 12.1 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

ncx-co/ifm_deferred_harvest

Documents, Data, and Code. The NCX Methodology For Improved Forest Management (IFM) Through Short-Term Harvest Deferral.

Language: R - Size: 462 KB - Last synced: 29 days ago - Pushed: about 1 year ago - Stars: 11 - Forks: 2

poetter-sebastian/Simulation

This is a nature simulation in the unity 3D engine

Language: C# - Size: 194 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

kcbrock/kcbrockresearch.com

Kelsey Brock's Personal Website; visit kcbrockresearch.com

Language: CSS - Size: 3.56 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

miguel-porto/eicm

Explicit Interaction Community Models

Language: R - Size: 232 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 6 - Forks: 1

gauravsk/ecoevoapps

THIS IS A MIRROR of the development site: https://gitlab.com/ecoevoapps/ecoevoapps

Language: R - Size: 1.38 MB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 1

egouldo/EcoConsQRPs

Questionable Research Practices in Ecology and Conservation

Language: TeX - Size: 125 KB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

densitymodelling/dsmextra

Extrapolation assessments in density surface models

Language: R - Size: 16.6 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 3

dinilu/dsclim

Ease the use of the climate4r package to downscale TraCE21ka and CMIP5 climate data in combination with UERRA reanalysis data.

Language: R - Size: 4.44 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

ChrisJones687/AphisGeneralizablePestandPathogenModel 📦

Language: R - Size: 7.79 MB - Last synced: 5 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

adam-rumpf/mtbi-hawk-epidemiology 📦

A collection of MATLAB scripts used for a research project at the Mathematical and Theoretical Biology Institute (MTBI) 2011 Summer program.

Language: MATLAB - Size: 23.4 KB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

ghuertaramos/ENMOD 📦

Ecological Niche Modeling on Docker

Language: R - Size: 167 KB - Last synced: 3 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

adraper2/DISC_bayesian 📦

This is a repository for project 2 during my DISC REU research program at the University of Notre Dame. This project involved applying a bayesian point process model using a forestry dataset from the 1800s.

Language: R - Size: 172 MB - Last synced: 5 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

adraper2/DISC_chesapeake 📦

Project 1 of the DISC REU at Notre Dame. It involves classifying sedge and grass plots within the Chesapeake Bay using satellite image processing.

Language: R - Size: 8.21 MB - Last synced: 3 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

boyanangelov/species2vec

Species vector representations

Language: Jupyter Notebook - Size: 5.4 MB - Last synced: 5 months ago - Pushed: over 5 years ago - Stars: 4 - Forks: 0

elkalexno/ENM

Products_ENM

Size: 7.89 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

gkhimesboor/HimesBoor_etal_2022_MEE

Himes Boor, G.K., T.L. McGuire, A.J. Warlick, R.L. Taylor, S.J. Converse, J.R. McClung, A.D. Stephens. 2022. Estimating reproductive rates and juvenile survival when offspring ages are uncertain: a novel multievent mark-recapture model applied to an endangered beluga whale population. Methods in Ecology and Evolution

Language: R - Size: 882 KB - Last synced: 5 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

abuck2/ecology_simulations

Agent-based simulation of carrot-rabbits-foxes with

Language: Python - Size: 1.08 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

oliviergimenez/capture-recapture-review

material for a review on capture-recapture methods and questions

Size: 48.8 MB - Last synced: about 2 months ago - Pushed: almost 4 years ago - Stars: 9 - Forks: 0

WebAxol/EvolutionSimJS

A simulator of ecosystems, where multiple species can be established and hierarchies can be built between organisms.

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valentinitnelav/bootdissim

R package for building turnover saturation curves via bootstrapping

Language: R - Size: 203 KB - Last synced: 11 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

dimarenich/REANA

Servicio de difusión de indicadores ambientales (MDEI) e índices analíticos de calidad de vida (MDIDX) en una región, ciudad, provincia o comunidad de España.

Language: Python - Size: 1.66 MB - Last synced: 3 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

vprud/air_tracer

Deep learning solution for air pollution monitoring using ground and satellite data.

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borkowsk/Populations_model

Populations network model

Language: Processing - Size: 30.7 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

Aariq/efi-2022-phenocam

Phenocam forecasting challenge done as part of the NEFI short course in 2020 https://ecoforecast.org/nefi2022/

Language: R - Size: 12.3 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1

cmerow/rangeModelMetadata

Language: R - Size: 13.2 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 5 - Forks: 1

syntheticdinosaur/Central-Place-Foraging

Agent-based modelling of a central place forager under predation risk

Language: Python - Size: 8.89 MB - Last synced: 3 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

jeremieboudreault/fish_habitat_modelling_functional_regression

Scientific research modelling the fish physico-thermal habitat with a functional regression model.

Language: R - Size: 5.64 MB - Last synced: 5 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

vaishnu7/diffusive-prey-predator-model

the diffusive prey-predator model is solved using the Finite Difference Method. the research article referred to is mentioned here.

Language: MATLAB - Size: 8.79 KB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

emilio-berti/assembly

The R package assembly

Language: R - Size: 17.2 MB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

imohamme/tethys_nasaaccess

NASAaccess - Tethys is a software application in the form of a web application. The software can generate gridded ascii tables of climate (CMIP5, CMIP6), weather data (GPM, TRMM), and Global Land Data Assimilation data products (GLDAS) needed to drive various hydrological models.

Language: JavaScript - Size: 15.9 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 2

LukeEcomod/APES_Jan2016

APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

Size: 9.01 MB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 2

bluegreen-labs/icoscp

Interface to the 'ICOS' Carbon Portal

Language: R - Size: 469 KB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

jeremieboudreault/habitat_suitability_curves_fda

Scientific research taking a new look at habitat suitability curves through functional data analysis.

Language: R - Size: 4.93 MB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

kdberends/dotter

Managing ecohydraulics of lowland streams

Language: Python - Size: 3.95 MB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

CABAH/Inferring-networks-and-modelling-trophic-cascades Fork of JohnLlewelyn/Inferring-networks-and-modelling-trophic-cascades

Scripts and data associated with the paper: Sahul’s megafauna species were vulnerable to plant-community changes due to their position in the trophic network

Language: R - Size: 45.6 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

FelixNoessler/QCB_Black_Kite

Occupancy model of the Black Kite in Spain under current and future predicted climate scenarios

Language: R - Size: 43.9 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

FelixNoessler/Individuals-based-modelling-with-RangeShiftR

Individual-based model of a theoretical reintroduction of wild boars in France

Language: R - Size: 14.1 MB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

essicolo/ecologie-mathematique-Py

🐍🌿 Écologie mathématique avec Python

Language: Jupyter Notebook - Size: 15.1 MB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 1

bitbacchus/facia

fairy circle cellular automaton model

Language: NetLogo - Size: 26.4 KB - Last synced: 5 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

RaoulWolf/UV-radiation-affects-anti-predatory-defense-traits-in-Daphnia-pulex

This repository contains the raw data and R scripts for "UV radiation affects anti-predatory defense traits in Daphnia pulex" by Eshun-Wilson et al., 2020

Language: R - Size: 183 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

boyanangelov/interpretable_sdm

Interpretable Species Distribution Modeling example

Language: R - Size: 1.53 MB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

atyre2/tidypop

tidy interface to single species population models

Language: R - Size: 3.48 MB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

cReedHranac/FS

Predicting Ebolavirus disease risk and the role of African bat birthing

Language: R - Size: 455 MB - Last synced: 5 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

OdilonVieira/chamaeza_distribution

Data used in: "Estudo da distribuição do gênero chamaeza no estado do Rio de Janeiro"

Language: R - Size: 29.3 KB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

Pakillo/phyloENM-TREE

Comparing independent, partial pooling, and phylogeny-informed ecological niche models

Language: TeX - Size: 374 KB - Last synced: 5 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 1

roliveros-ramos/sharkbox

Language: R - Size: 168 KB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

cjcarlson/rangeshifts

🐻 🔜 Tools for documenting range shifts 🔜 🐻

Language: R - Size: 30.3 KB - Last synced: 3 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

mukherjeesoham/Spider-Networks

Social network analysis of prey capture in S. sarasinorum.

Language: Python - Size: 11.2 MB - Last synced: 5 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

mottJohn/HomeRange

Notes on conducting home range analysis

Size: 17.6 KB - Last synced: 4 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

The-Nature-Conservancy-NASCA/Biodiversity

Code for Biodiversity Analysis in the Northern Andes and Southern Central America. Mainly in R

Language: R - Size: 5.86 KB - Last synced: 3 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

MElHuseyni/Predict-African-Soil-Property

Africa Soil Property Prediction Challenge in Kaggle

Language: Jupyter Notebook - Size: 4.88 KB - Last synced: 5 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 2

ssyp-ru/ssyp09-ws03

Эколес

Language: Lua - Size: 96.7 KB - Last synced: 5 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0