vegandevs/vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

Language: R - Size: 541 MB - Last synced at: about 23 hours ago - Pushed at: 1 day ago - Stars: 503 - Forks: 105

ESA99/canopy_height

Master Thesis

Language: Python - Size: 846 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 2 - Forks: 0

nicholasjclark/mvgam

{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for multivariate modeling and forecasting

Language: R - Size: 1.07 GB - Last synced at: 10 days ago - Pushed at: 13 days ago - Stars: 167 - Forks: 16

diegomvd/ecological.network.conservation

Moving beyond species-based conservation planning by simulating the effect of diverse local conservation measures on the global preservation of biotic interaction networks.

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egouldo/EcoConsQRPs

Questionable Research Practices in Ecology and Conservation

Language: BibTeX Style - Size: 7.38 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 0

egphilippov1/ASI_happy_biosphere_quasieternity

Artificial Superintelligence for the (Good!) Quasieternity for (Good!) Happiness for the (Somewhat Unrestricted, local & global & more!) Biosphere (of unrestricted Any and maybe more).

Size: 76.2 KB - Last synced at: 19 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 1

SEAF-CS/csiem_model_ecopath

Ecosystem / food-web model for Cockburn Sound

Size: 11.1 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

open-AIMS/CoralBlox.jl

CoralBlox is a coral growth and mortality ecological model, developed for decision support, that iterates over discretized distributions.

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Orwebcraft-ecologists-association/Orwebcraft

Orwebcraft, ecologists association

Size: 15.6 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

stangandaho/ct

ct is an R package to manage and analyze camera trap data for wildlife monitoring and ecological research.

Language: R - Size: 7.91 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

Ahmed-Ibrahim33/Conditional-Defector-Simulations

This repository contains NetLogo simulations based on the paper "The conditional defector strategies can violate the most crucial supporting mechanisms of cooperation" (Scientific Reports, 2022). The models explore evolution of cooperation, conditional defection, and mechanisms like kin selection, spatial structure, and punishment.

Language: NetLogo - Size: 25.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

Ezequas/Orwebcraft

🌳 Advance ecological research and conservation with Orwebcraft. Join our collaborative space to share code and data for a sustainable future.

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SimonDedman/FIU-SharkFishCoral-FrenchPoly

Trophic roles of sharks and fish on French Polynesian coral reefs

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dhercar/gdmmTMB

An R package for fitting Generalised Dissimilarity Mixed Models (GDMM) with TMB

Language: R - Size: 2.32 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

ieco-lab/scari

A multiscale, ensemble modeling framework for assessing invasive species risk under climate change.

Language: R - Size: 30.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

nicholasjclark/physalia-forecasting-course

Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}

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Deltares/D-EcoImpact

A Python based kernel to perform spatial (environmental) impact assessment

Language: Python - Size: 56 MB - Last synced at: 6 days ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 1

gavinabernethy/arteeri

Arteeri spatial population dynamics tool (formerly 'Artemis').

Language: Python - Size: 916 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

samanghs/habitat

habitat: An R Package for Analyzing and Comparing Habitat Changes

Language: R - Size: 906 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

Skumarj4/ASI_knots

Explore Artificial Superintelligence Knots (ASI): theory and algorithms connecting topology, AI safety, and system architecture for ASI research. :octocat:

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egphilippov1/ASI_knots

Artificial Superintelligence Knots (I coined or re-invented this).

Size: 16.6 KB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 2 - Forks: 1

gemmagerber/autoLIMR

Automated Translation of Network Data into Declaration Files Compatible with LIM and limSolve

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nicholasjclark/ESA_2024_timeseries

A workshop on ecological forecasting with the {mvgam} package for the Ecological Society of Australia 2024 Conference

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anjalisadanandanp/abm-elephant-project

An Agent-Based Model of Elephant Crop Raid Dynamics in the Periyar-Agasthyamalai Complex, India

Language: Python - Size: 9.19 GB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 1 - Forks: 1

HijoBejuco/dynamical-systems-modeling

🌀🌿 This repo explores the theory of complex systems and how to use it for modeling real world entities such as forests.

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ben1post/phydra

Phydra is a python package for flexible and reproducible marine ecosystem modelling, using the Xarray-simlab-ODE Framework

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gpaasi/ebola-MaxEnt-ecological-niche-modeling-uganda

Environmental niche modeling of ebolavirus occurrence in Uganda using MaxEnt, incorporating climate, vegetation, elevation, and human settlement predictors to identify high‐risk spillover zones.

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palmaraz/GuadalShiftR

Exploring tipping points, catastrophic bifurcations and alternative stable states in the Guadalquivir marshes

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cadam00/SeaGraphs

Sea Currents to Connectivity Transformation

Language: R - Size: 6.22 MB - Last synced at: 23 days ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

torrassam/Fire-Diversity

This repository provides the code and data to model the plant communities dynamic with fire-vegetation feedback

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stangandaho/nimo

A Graphical User Interface-Based R Package for Species Distribution Modeling

Language: R - Size: 2.08 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 1

atsa-es/atsa

Applied Time Series Analysis - course website repository.

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bluegreen-labs/icoscp

Interface to the 'ICOS' Carbon Portal

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allenmonkey970/Slime-Evolution-Simulation

An ecological simulation modeling competition between "greedy" and "minimal" resource gathering strategies in a virtual slime population. Features spatial interaction, genetic competition, and visualizations.

Language: Python - Size: 6.47 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

b-c-r/DynaSymEducation

This repository hosts educational materials for the DFG Research Unit 5726 "DynaSym".

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densitymodelling/dsmextra

Extrapolation assessments in density surface models

Language: R - Size: 16.6 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 5 - Forks: 4

florent-leclercq/lotkavolterra_simulator

Simulator of the Lotka-Volterra prey-predator system with demographic and observational noise and biases

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gauravsk/ecoevoapps

THIS IS A MIRROR of the development site: https://gitlab.com/ecoevoapps/ecoevoapps

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PredictiveEcology/LandR

Landscape Ecosystem Modelling in R

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dinilu/dsclim

Ease the use of the climate4r package to downscale TraCE21ka and CMIP5 climate data in combination with UERRA reanalysis data.

Language: R - Size: 6.14 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

LEEClab/LS_CORRIDORS

Simulation of multiple ecological functional corridors

Language: Python - Size: 75.9 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 23 - Forks: 12

wilsonfrantine/ggmodel

A function collection to plot R base model objects

Language: R - Size: 340 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

cadam00/EGCorrs

Evolutionary Game Corridors

Language: R - Size: 2.92 MB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0

FelixNoessler/calibration_grasslandtraitsim_v1

Calibration of the GrasslandTraitSim.jl model to grassland data of the Biodiversity Exploratories

Language: Julia - Size: 56.5 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

atredennick/modselr

Data and function bundle for model selection guide for ecologists

Language: R - Size: 1.46 MB - Last synced at: 8 months ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

egraham/FFT_and_Soil_Temperatures

R Shiny script to visualize and model sub-surface soil temperatures

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Lawrence-Leung/2024-COMAP-Project

Investigating Population Diversity, Sex Ratio Dynamics, and Resource Utilization: Insights into Lamprey Species within the Multispecies Ecosystem of the Great Lakes

Language: Python - Size: 12.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

cmerow/rangeModelMetadata

Language: R - Size: 13.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1

emilio-berti/assembly

The R package assembly

Language: R - Size: 17.2 MB - Last synced at: 8 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

ConFooBio/gmse

An R package for simulating Generalised Management Strategy Evaluation

Language: TeX - Size: 283 MB - Last synced at: 12 days ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 5

poetter-sebastian/Simulation

This is a nature simulation in the unity 3D engine

Language: C# - Size: 194 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

valentinitnelav/bootstrapnet

R package for bootstrapping indices of bipartite ecological networks

Language: R - Size: 6.68 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 2

surh/vibrio_squid

Mathematical model(s) for the symbisis between Allivibrio fisheri and Euprymna scalopes

Language: R - Size: 17.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

evallabres/interacting-seagrasses

code and data for the article "A mathematical model for inter-specific interactions in seagrasses" by Llabrés, Eva; Mayol, Elvira; Marbà, Núria; Sintes, Tomàs, published in OIKOS with doi:10.1111/oik.09296

Language: Fortran - Size: 7.64 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

nationalparkservice/HTLN-fish-cecr

Climate exposure and climate response in fish communities

Size: 449 KB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

imohamme/tethys_nasaaccess

NASAaccess - Tethys is a software application in the form of a web application. The software can generate gridded ascii tables of climate (CMIP5, CMIP6), weather data (GPM, TRMM), and Global Land Data Assimilation data products (GLDAS) needed to drive various hydrological models.

Language: JavaScript - Size: 15.9 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 2

vaishnu7/Riparian-Invertebrates-Agriculture-Model

This is the code used in the article "Implications of Agricultural Practices on Vegetation and Terrestrial Invertebrates in Riparian Zone: A Nonlinear Modelling Study"

Language: TeX - Size: 667 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mjg211/phaseR

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

Language: R - Size: 2.38 MB - Last synced at: 12 days ago - Pushed at: about 3 years ago - Stars: 15 - Forks: 3

BLayman/Artificial-Life-Simulator

An ecologically inspired multi-agent system. Agents are designed with neural network based decision making, and complex resource requirements.

Language: C# - Size: 44.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 44 - Forks: 4

faizee-ali/ElevationalMigration

This is an ongoing project on Characterizing, calculating and understanding(the drivers of) Elevational Migration of resient birds in the southern western Ghats.

Language: R - Size: 25.6 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

rudeboybert/SDS390

Smith College SDS390 Ecological Forecasting

Language: Jupyter Notebook - Size: 139 MB - Last synced at: 4 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

FelixNoessler/RegionalGrasslandSim.jl

Simulation model of the biomass of grassland plant species

Language: Julia - Size: 12.1 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

ncx-co/ifm_deferred_harvest

Documents, Data, and Code. The NCX Methodology For Improved Forest Management (IFM) Through Short-Term Harvest Deferral.

Language: R - Size: 462 KB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 11 - Forks: 1

kcbrock/kcbrockresearch.com

Kelsey Brock's Personal Website; visit kcbrockresearch.com

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KevCaz/ecoocc

:package: Occurrence / Co-occurrence / more

Language: R - Size: 3.56 MB - Last synced at: 7 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

miguel-porto/eicm

Explicit Interaction Community Models

Language: R - Size: 232 KB - Last synced at: 3 days ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1

ChrisJones687/AphisGeneralizablePestandPathogenModel 📦

Language: R - Size: 7.79 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

adam-rumpf/mtbi-hawk-epidemiology 📦

A collection of MATLAB scripts used for a research project at the Mathematical and Theoretical Biology Institute (MTBI) 2011 Summer program.

Language: MATLAB - Size: 23.4 KB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 1

ghuertaramos/ENMOD 📦

Ecological Niche Modeling on Docker

Language: R - Size: 167 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

adraper2/DISC_bayesian 📦

This is a repository for project 2 during my DISC REU research program at the University of Notre Dame. This project involved applying a bayesian point process model using a forestry dataset from the 1800s.

Language: R - Size: 172 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

adraper2/DISC_chesapeake 📦

Project 1 of the DISC REU at Notre Dame. It involves classifying sedge and grass plots within the Chesapeake Bay using satellite image processing.

Language: R - Size: 8.21 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

boyanangelov/species2vec

Species vector representations

Language: Jupyter Notebook - Size: 5.4 MB - Last synced at: about 2 months ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 0

elkalexno/ENM

Products_ENM

Size: 7.89 MB - Last synced at: 7 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

gkhimesboor/HimesBoor_etal_2022_MEE

Himes Boor, G.K., T.L. McGuire, A.J. Warlick, R.L. Taylor, S.J. Converse, J.R. McClung, A.D. Stephens. 2022. Estimating reproductive rates and juvenile survival when offspring ages are uncertain: a novel multievent mark-recapture model applied to an endangered beluga whale population. Methods in Ecology and Evolution

Language: R - Size: 882 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

abuck2/ecology_simulations

Agent-based simulation of carrot-rabbits-foxes with

Language: Python - Size: 1.08 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

oliviergimenez/capture-recapture-review

material for a review on capture-recapture methods and questions

Size: 48.8 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 9 - Forks: 0

WebAxol/EvolutionSimJS

A simulator of ecosystems, where multiple species can be established and hierarchies can be built between organisms.

Language: JavaScript - Size: 5.96 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

valentinitnelav/bootdissim

R package for building turnover saturation curves via bootstrapping

Language: R - Size: 203 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

OLimberger/SaFiM

A simple model for simulation of fire spread in savannas and other grass-dominated ecosystems.

Language: C++ - Size: 51.8 KB - Last synced at: 3 months ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 2

dimarenich/REANA

Servicio de difusión de indicadores ambientales (MDEI) e índices analíticos de calidad de vida (MDIDX) en una región, ciudad, provincia o comunidad de España.

Language: Python - Size: 1.66 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

vprud/air_tracer

Deep learning solution for air pollution monitoring using ground and satellite data.

Language: Jupyter Notebook - Size: 56.8 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

borkowsk/Populations_model

Populations network model

Language: Processing - Size: 30.7 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

Aariq/efi-2022-phenocam

Phenocam forecasting challenge done as part of the NEFI short course in 2020 https://ecoforecast.org/nefi2022/

Language: R - Size: 12.3 MB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1

syntheticdinosaur/Central-Place-Foraging

Agent-based modelling of a central place forager under predation risk

Language: Python - Size: 8.89 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

jeremieboudreault/fish_habitat_modelling_functional_regression

Scientific research modelling the fish physico-thermal habitat with a functional regression model.

Language: R - Size: 5.64 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

vaishnu7/diffusive-prey-predator-model

the diffusive prey-predator model is solved using the Finite Difference Method. the research article referred to is mentioned here.

Language: MATLAB - Size: 8.79 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

LukeEcomod/APES_Jan2016

APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

Size: 9.01 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 2

jeremieboudreault/habitat_suitability_curves_fda

Scientific research taking a new look at habitat suitability curves through functional data analysis.

Language: R - Size: 4.93 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

kdberends/dotter

Managing ecohydraulics of lowland streams

Language: Python - Size: 3.95 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

CABAH/Inferring-networks-and-modelling-trophic-cascades Fork of JohnLlewelyn/Inferring-networks-and-modelling-trophic-cascades

Scripts and data associated with the paper: Sahul’s megafauna species were vulnerable to plant-community changes due to their position in the trophic network

Language: R - Size: 45.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

FelixNoessler/QCB_Black_Kite

Occupancy model of the Black Kite in Spain under current and future predicted climate scenarios

Language: R - Size: 43.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

FelixNoessler/Individuals-based-modelling-with-RangeShiftR

Individual-based model of a theoretical reintroduction of wild boars in France

Language: R - Size: 14.1 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

essicolo/ecologie-mathematique-Py

🐍🌿 Écologie mathématique avec Python

Language: Jupyter Notebook - Size: 15.1 MB - Last synced at: 10 days ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

bitbacchus/facia

fairy circle cellular automaton model

Language: NetLogo - Size: 26.4 KB - Last synced at: 23 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Ely-S/ODEtoJS

Simulates systems of Ordenary Differential Equations in your browser. Compatible with Stella files.

Language: CSS - Size: 1.38 MB - Last synced at: 23 days ago - Pushed at: about 10 years ago - Stars: 0 - Forks: 0

RaoulWolf/UV-radiation-affects-anti-predatory-defense-traits-in-Daphnia-pulex

This repository contains the raw data and R scripts for "UV radiation affects anti-predatory defense traits in Daphnia pulex" by Eshun-Wilson et al., 2020

Language: R - Size: 183 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

boyanangelov/interpretable_sdm

Interpretable Species Distribution Modeling example

Language: R - Size: 1.53 MB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

atyre2/tidypop

tidy interface to single species population models

Language: R - Size: 3.48 MB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 1

cReedHranac/FS

Predicting Ebolavirus disease risk and the role of African bat birthing

Language: R - Size: 455 MB - Last synced at: 8 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

OdilonVieira/chamaeza_distribution

Data used in: "Estudo da distribuição do gênero chamaeza no estado do Rio de Janeiro"

Language: R - Size: 29.3 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0