GitHub topics: ecological-modelling

Repositories

allenmonkey970/Slime-Evolution-Simulation

An ecological simulation modeling competition between "greedy" and "minimal" resource gathering strategies in a virtual slime population. Features spatial interaction, genetic competition, and visualizations.

Language: Python - Size: 6.47 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

vegandevs/vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

Language: R - Size: 499 MB - Last synced at: 4 days ago - Pushed at: 6 days ago - Stars: 482 - Forks: 100

atsa-es/atsa

Applied Time Series Analysis - course website repository.

Language: HTML - Size: 1.08 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 17 - Forks: 9

nicholasjclark/mvgam

{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for multivariate modeling and forecasting

Language: R - Size: 992 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 155 - Forks: 15

b-c-r/DynaSymEducation

This repository hosts educational materials for the DFG Research Unit 5726 "DynaSym".

Size: 20.5 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

nicholasjclark/physalia-forecasting-course

Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}

Language: HTML - Size: 400 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 39 - Forks: 11

densitymodelling/dsmextra

Extrapolation assessments in density surface models

Language: R - Size: 16.6 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 5 - Forks: 4

florent-leclercq/lotkavolterra_simulator

Simulator of the Lotka-Volterra prey-predator system with demographic and observational noise and biases

Language: Jupyter Notebook - Size: 1.37 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

SimonDedman/FIU-SharkFishCoral-FrenchPoly

Trophic roles of sharks and fish on French Polynesian coral reefs

Language: R - Size: 249 KB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

gauravsk/ecoevoapps

THIS IS A MIRROR of the development site: https://gitlab.com/ecoevoapps/ecoevoapps

Language: R - Size: 1.41 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 1

PredictiveEcology/LandR

Landscape Ecosystem Modelling in R

Language: R - Size: 7.65 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 17 - Forks: 10

HijoBejuco/dynamical-systems-modeling

🌀🌿 This repo explores the theory of complex systems and how to use it for modeling real world entities such as forests.

Language: Jupyter Notebook - Size: 459 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

anjalisadanandanp/abm-elephant-project

An Agent-Based Model of Elephant Crop Raid Dynamics in the Periyar-Agasthyamalai Complex, India

Language: Python - Size: 5.52 GB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 0 - Forks: 1

samanghs/habitat

Language: R - Size: 634 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

cadam00/SeaGraphs

Sea Currents to Connectivity Transformation

Language: R - Size: 5.88 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

Deltares/D-EcoImpact

A Python based kernel to perform spatial (environmental) impact assessment

Language: Python - Size: 54.9 MB - Last synced at: 4 days ago - Pushed at: 19 days ago - Stars: 5 - Forks: 1

open-AIMS/CoralBlox.jl

CoralBlox is a coral growth and mortality model that simulates distinct coral functional groups indirectly competing for a limited space over time. The model does not directly consider natural disturbances nor does it have representation of anthropogenic restoration and conservation activities such as coral seeding or cloud brightening.

Language: Julia - Size: 608 KB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 1

dinilu/dsclim

Ease the use of the climate4r package to downscale TraCE21ka and CMIP5 climate data in combination with UERRA reanalysis data.

Language: R - Size: 6.14 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

LEEClab/LS_CORRIDORS

Simulation of multiple ecological functional corridors

Language: Python - Size: 75.9 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 23 - Forks: 12

wilsonfrantine/ggmodel

A function collection to plot R base model objects

Language: R - Size: 340 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

cadam00/EGCorrs

Evolutionary Game Corridors

Language: R - Size: 2.92 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

FelixNoessler/calibration_grasslandtraitsim_v1

Calibration of the GrasslandTraitSim.jl model to grassland data of the Biodiversity Exploratories

Language: Julia - Size: 56.5 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

gemmagerber/autoLIMR

Automated Translation of Network Data into Declaration Files Compatible with LIM and limSolve

Language: R - Size: 3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

bluegreen-labs/icoscp

Interface to the 'ICOS' Carbon Portal

Language: R - Size: 469 KB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

atredennick/modselr

Data and function bundle for model selection guide for ecologists

Language: R - Size: 1.46 MB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

egraham/FFT_and_Soil_Temperatures

R Shiny script to visualize and model sub-surface soil temperatures

Language: CSS - Size: 2.51 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Lawrence-Leung/2024-COMAP-Project

Investigating Population Diversity, Sex Ratio Dynamics, and Resource Utilization: Insights into Lamprey Species within the Multispecies Ecosystem of the Great Lakes

Language: Python - Size: 12.7 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

cmerow/rangeModelMetadata

Language: R - Size: 13.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 5 - Forks: 1

emilio-berti/assembly

The R package assembly

Language: R - Size: 17.2 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

ConFooBio/gmse

An R package for simulating Generalised Management Strategy Evaluation

Language: TeX - Size: 283 MB - Last synced at: 17 days ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 5

poetter-sebastian/Simulation

This is a nature simulation in the unity 3D engine

Language: C# - Size: 194 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

valentinitnelav/bootstrapnet

R package for bootstrapping indices of bipartite ecological networks

Language: R - Size: 6.68 MB - Last synced at: 11 months ago - Pushed at: 12 months ago - Stars: 4 - Forks: 2

surh/vibrio_squid

Mathematical model(s) for the symbisis between Allivibrio fisheri and Euprymna scalopes

Language: R - Size: 17.6 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

evallabres/interacting-seagrasses

code and data for the article "A mathematical model for inter-specific interactions in seagrasses" by Llabrés, Eva; Mayol, Elvira; Marbà, Núria; Sintes, Tomàs, published in OIKOS with doi:10.1111/oik.09296

Language: Fortran - Size: 7.64 MB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

nationalparkservice/HTLN-fish-cecr

Climate exposure and climate response in fish communities

Size: 449 KB - Last synced at: 3 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

stangandaho/nimo

A Graphical User Interface-Based R Package for Species Distribution Modeling

Language: HTML - Size: 1.75 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

imohamme/tethys_nasaaccess

NASAaccess - Tethys is a software application in the form of a web application. The software can generate gridded ascii tables of climate (CMIP5, CMIP6), weather data (GPM, TRMM), and Global Land Data Assimilation data products (GLDAS) needed to drive various hydrological models.

Language: JavaScript - Size: 15.9 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2

vaishnu7/Riparian-Invertebrates-Agriculture-Model

This is the code used in the article "Implications of Agricultural Practices on Vegetation and Terrestrial Invertebrates in Riparian Zone: A Nonlinear Modelling Study"

Language: TeX - Size: 667 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

palmaraz/GuadalShiftR

Exploring tipping points, catastrophic bifurcations and alternative stable states in the Guadalquivir marshes

Language: TeX - Size: 53.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

mjg211/phaseR

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

Language: R - Size: 2.38 MB - Last synced at: 21 days ago - Pushed at: over 2 years ago - Stars: 15 - Forks: 3

ben1post/phydra

Phydra is a python package for flexible and reproducible marine ecosystem modelling, using the Xarray-simlab-ODE Framework

Language: Jupyter Notebook - Size: 80.9 MB - Last synced at: 20 days ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

BLayman/Artificial-Life-Simulator

An ecologically inspired multi-agent system. Agents are designed with neural network based decision making, and complex resource requirements.

Language: C# - Size: 44.3 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 44 - Forks: 4

faizee-ali/ElevationalMigration

This is an ongoing project on Characterizing, calculating and understanding(the drivers of) Elevational Migration of resient birds in the southern western Ghats.

Language: R - Size: 25.6 MB - Last synced at: 10 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

rudeboybert/SDS390

Smith College SDS390 Ecological Forecasting

Language: Jupyter Notebook - Size: 139 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

FelixNoessler/RegionalGrasslandSim.jl

Simulation model of the biomass of grassland plant species

Language: Julia - Size: 12.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ncx-co/ifm_deferred_harvest

Documents, Data, and Code. The NCX Methodology For Improved Forest Management (IFM) Through Short-Term Harvest Deferral.

Language: R - Size: 462 KB - Last synced at: 2 days ago - Pushed at: about 2 years ago - Stars: 11 - Forks: 1

kcbrock/kcbrockresearch.com

Kelsey Brock's Personal Website; visit kcbrockresearch.com

Language: CSS - Size: 3.56 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

KevCaz/ecoocc

:package: Occurrence / Co-occurrence / more

Language: R - Size: 3.56 MB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

miguel-porto/eicm

Explicit Interaction Community Models

Language: R - Size: 232 KB - Last synced at: 24 days ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 1

egouldo/EcoConsQRPs

Questionable Research Practices in Ecology and Conservation

Language: TeX - Size: 125 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

ChrisJones687/AphisGeneralizablePestandPathogenModel 📦

Language: R - Size: 7.79 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

adam-rumpf/mtbi-hawk-epidemiology 📦

A collection of MATLAB scripts used for a research project at the Mathematical and Theoretical Biology Institute (MTBI) 2011 Summer program.

Language: MATLAB - Size: 23.4 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

ghuertaramos/ENMOD 📦

Ecological Niche Modeling on Docker

Language: R - Size: 167 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

adraper2/DISC_bayesian 📦

This is a repository for project 2 during my DISC REU research program at the University of Notre Dame. This project involved applying a bayesian point process model using a forestry dataset from the 1800s.

Language: R - Size: 172 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

adraper2/DISC_chesapeake 📦

Project 1 of the DISC REU at Notre Dame. It involves classifying sedge and grass plots within the Chesapeake Bay using satellite image processing.

Language: R - Size: 8.21 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

boyanangelov/species2vec

Species vector representations

Language: Jupyter Notebook - Size: 5.4 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 0

elkalexno/ENM

Products_ENM

Size: 7.89 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

gkhimesboor/HimesBoor_etal_2022_MEE

Himes Boor, G.K., T.L. McGuire, A.J. Warlick, R.L. Taylor, S.J. Converse, J.R. McClung, A.D. Stephens. 2022. Estimating reproductive rates and juvenile survival when offspring ages are uncertain: a novel multievent mark-recapture model applied to an endangered beluga whale population. Methods in Ecology and Evolution

Language: R - Size: 882 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

abuck2/ecology_simulations

Agent-based simulation of carrot-rabbits-foxes with

Language: Python - Size: 1.08 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

oliviergimenez/capture-recapture-review

material for a review on capture-recapture methods and questions

Size: 48.8 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 9 - Forks: 0

WebAxol/EvolutionSimJS

A simulator of ecosystems, where multiple species can be established and hierarchies can be built between organisms.

Language: JavaScript - Size: 5.96 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

valentinitnelav/bootdissim

R package for building turnover saturation curves via bootstrapping

Language: R - Size: 203 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

dimarenich/REANA

Servicio de difusión de indicadores ambientales (MDEI) e índices analíticos de calidad de vida (MDIDX) en una región, ciudad, provincia o comunidad de España.

Language: Python - Size: 1.66 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

vprud/air_tracer

Deep learning solution for air pollution monitoring using ground and satellite data.

Language: Jupyter Notebook - Size: 56.8 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

borkowsk/Populations_model

Populations network model

Language: Processing - Size: 30.7 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Aariq/efi-2022-phenocam

Phenocam forecasting challenge done as part of the NEFI short course in 2020 https://ecoforecast.org/nefi2022/

Language: R - Size: 12.3 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

syntheticdinosaur/Central-Place-Foraging

Agent-based modelling of a central place forager under predation risk

Language: Python - Size: 8.89 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

jeremieboudreault/fish_habitat_modelling_functional_regression

Scientific research modelling the fish physico-thermal habitat with a functional regression model.

Language: R - Size: 5.64 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

vaishnu7/diffusive-prey-predator-model

the diffusive prey-predator model is solved using the Finite Difference Method. the research article referred to is mentioned here.

Language: MATLAB - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

LukeEcomod/APES_Jan2016

APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

Size: 9.01 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 2

jeremieboudreault/habitat_suitability_curves_fda

Scientific research taking a new look at habitat suitability curves through functional data analysis.

Language: R - Size: 4.93 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

kdberends/dotter

Managing ecohydraulics of lowland streams

Language: Python - Size: 3.95 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

CABAH/Inferring-networks-and-modelling-trophic-cascades Fork of JohnLlewelyn/Inferring-networks-and-modelling-trophic-cascades

Scripts and data associated with the paper: Sahul’s megafauna species were vulnerable to plant-community changes due to their position in the trophic network

Language: R - Size: 45.6 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0