savvas-paragkamian/necca_epopteia

This repository contains scripts for the Natura2000 reporting of 2025 of invertebrates of Greece as part of ARTICLE 17 of the Directive 92/43/EEC

Language: R - Size: 240 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

BioDT/IASDT.R

R package to support the invasive alien species (IAS) prototype Digital Twin (IAS-pDT), as part of the EU-funded BioDT project.

Language: R - Size: 7.51 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1 - Forks: 0

atlantichabitatmodels/communityofpractice

A website to hold information and resources for the Atlantic Canada Species At Risk Habitat Modelling Community of Practice

Language: HTML - Size: 74 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 3

AtlasOfLivingAustralia/ala-labs

Repository for ALA Labs

Language: HTML - Size: 2.06 GB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 19 - Forks: 4

earth-chris/elapid

Species distribution modeling tools, including a python implementation of Maxent

Language: Python - Size: 6.39 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 61 - Forks: 9

sjevelazco/flexsdm

Useful tools for constructing species distribution models

Language: R - Size: 104 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 51 - Forks: 7

rvalavi/blockCV

The blockCV package creates spatially or environmentally separated training and testing folds for cross-validation to provide a robust error estimation in spatially structured environments. See

Language: R - Size: 51.1 MB - Last synced at: 5 days ago - Pushed at: 7 months ago - Stars: 115 - Forks: 23

pbs-assess/sdmTMB

:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

Language: R - Size: 368 MB - Last synced at: 3 days ago - Pushed at: about 1 month ago - Stars: 207 - Forks: 27

EvolEcolGroup/tidysdm

R package to fit species distribution models (SDMs) using the 'tidymodels' framework

Language: R - Size: 44.7 MB - Last synced at: 5 days ago - Pushed at: 10 days ago - Stars: 32 - Forks: 9

EvolEcolGroup/pastclim

An R package providing helper functions to interact with timeseries of worldwide climate reconstructions

Language: R - Size: 34.5 MB - Last synced at: 16 days ago - Pushed at: about 1 month ago - Stars: 38 - Forks: 6

ieco-lab/scari

A multiscale framework for ensemble modeling invasive species risk assessments under forecasted climate shifts.

Language: R - Size: 13.2 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 0

MaitnerLab/OpenRange

Open Access Species Range Maps

Language: R - Size: 1.38 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 1 - Forks: 0

ShrimpFather7/Koster-Deep-Learning-Ecology

The data and scripts used for the publication by Nilsson et al. (2025), soon to be released as a preprint.

Language: Jupyter Notebook - Size: 19.9 MB - Last synced at: 25 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

TheoreticalEcology/s-jSDM

Scalable joint species distribution modeling

Language: R - Size: 51.3 MB - Last synced at: 24 days ago - Pushed at: 3 months ago - Stars: 70 - Forks: 15

peterbat1/fitMaxnet

Workflow to fit niche models to species occurrence data using glmnet via maxnet package

Language: R - Size: 16.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

PEM-Humboldt/biomodelos-sdm

BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

Language: R - Size: 205 MB - Last synced at: 15 days ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 4

peterbat1/processALA

R package to give easy access to ALA plant occurrence data

Language: R - Size: 39.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

geoSABINA/sabinaNSDM

Spatially-nested hierarchical SDMs

Language: R - Size: 40.1 MB - Last synced at: about 21 hours ago - Pushed at: 10 days ago - Stars: 6 - Forks: 2

iiasa/ibis.iSDM

Modelling framework for creating Integrated SDMS

Language: R - Size: 427 MB - Last synced at: 3 days ago - Pushed at: 8 days ago - Stars: 20 - Forks: 4

daniel-furman/Python-species-distribution-modeling

A brief Python tutorial for geospatial classification.

Language: HTML - Size: 21.7 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 21 - Forks: 6

PlekhanovaElena/Arctic_vegetation_prediction

Predicting how Actic vegetation types distribution in 2050 based on CAVM and CMIP6 climate models

Language: R - Size: 45.9 KB - Last synced at: 26 days ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

samanghs/habitat

Language: R - Size: 634 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

danddr/USE

A R package to perform uniform sampling in the environmental space

Language: R - Size: 30.9 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 6 - Forks: 2

eugeneyau/Tropical-Asian-Butterfly-Distribution

Language: R - Size: 6.55 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

r-a-dobson/dynamicSDM

An R package for species geographical distribution and abundance modelling at high spatiotemporal resolution

Language: R - Size: 28.7 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 2

bmaitner/S4DM

An R package focused on Species Distribution Modelling techniques for species with small sample sizes

Language: R - Size: 89.7 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

joeroe/WAsiaPaleoFloraENM

Compendium of data and code accompanying our paper 'Biogeography of crop progenitors and wild plant resources in the terminal Pleistocene and Early Holocene of West Asia, 14.7–8.3 ka'

Language: HTML - Size: 683 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

guilhermechicarolli/PDPD

Repositório dos dados do projeto de PDPD da UFABC "Impacto das mudanças climáticas no mismatch espacial em uma interação de polinização morcego-planta endêmica"

Language: HTML - Size: 330 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

ConsBiol-unibern/SDMtune

Performs Variables selection and model tuning for Species Distribution Models (SDMs). It provides also several utilities to display results.

Language: R - Size: 204 MB - Last synced at: 21 days ago - Pushed at: 5 months ago - Stars: 25 - Forks: 9

lidefi87/Crabeater_Distribution_East_Antarctica

Estimating past distribution of crabeater seals in the East Antarctica

Language: Jupyter Notebook - Size: 41.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

chenyangkang/Occupancy_NN

Machine learning based species occupancy-detection model for prediction problem

Language: Python - Size: 15.1 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

lance-waller-lab/envi

Environmental Interpolation using Spatial Kernel Density Estimation

Language: R - Size: 7.32 MB - Last synced at: 1 day ago - Pushed at: 6 months ago - Stars: 1 - Forks: 3

HemingNM/SESraster

Randomization of presence/absence species distribution raster data for calculating standardized effect sizes and testing null hypothesis.

Language: R - Size: 6.57 MB - Last synced at: 15 days ago - Pushed at: 7 months ago - Stars: 7 - Forks: 0

plantnet/GeoLifeCLEF

GeoLifeCLEF challenge toolkit and starter code

Language: Jupyter Notebook - Size: 73.9 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 59 - Forks: 27

irlcode/cctv

This is the code and data to replicate the analysis in Serebrennikov, Skougarevskiy (2023).

Language: R - Size: 30.1 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

cmerow/rangeModelMetadata

Language: R - Size: 13.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 5 - Forks: 1

zoonproject/zoon

The zoon R package

Language: HTML - Size: 10.3 MB - Last synced at: 9 days ago - Pushed at: about 5 years ago - Stars: 61 - Forks: 13

ecovision-uzh/sat-sinr

[ISPRS 2024] Sat-SINR: High-Resolution Species Distribution Models through Satellite Imagery

Language: Python - Size: 2.48 MB - Last synced at: 6 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 1

lifewatch/sdmpredictors

A compilation of environmental data for species distribution modelling

Language: R - Size: 44 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 29 - Forks: 5

ahasverus/bioclimaticatlas

Website of the Tundra Nunavik project

Language: R - Size: 578 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

Marcelo-Kenji-Noda/sdm-amazona-vinacea

Species Distribution Model Pipeline

Language: Jupyter Notebook - Size: 23.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

LLeiSong/eleDistribution

Multi-scale modeling for conservation and connectivity of African savanna elephant in Tanzania

Language: R - Size: 22.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

pedrohbraga/SpeciesDistribModelling-in-R-Workshop

Workshop on Introduction to Species Distribution Modelling, devolped by Pedro Henrique Braga and Julia Nordlund.

Language: HTML - Size: 1.99 MB - Last synced at: 11 months ago - Pushed at: over 6 years ago - Stars: 12 - Forks: 3

Arthur-Provost/WSL_Bern_fire_susceptibility

This project relates to a methodological report on canton Bern forest fire modelling and mitigation strategies.

Language: R - Size: 84 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

djordjepmihajlovic/Machine-Learning-Species-Analysis

A comprehensive species distribution analysis using various machine learning methods

Language: Python - Size: 105 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

emmachollet/ComparSDMsQuantifOverfitSuppInterpr_DataPackage

Package with data, scripts and plots for manuscript "A comparison of machine learning and statistical species distribution models: when overfitting hurts interpretation" (submitted to Ecological Modelling, Dec 2022)

Language: R - Size: 290 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1

timcdlucas/INLAutils

R package providing utilities for INLA

Language: R - Size: 7.47 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 25 - Forks: 11

cjcarlson/embarcadero

🌲🌉 Species distribution models with Bayesian additive regression trees

Language: R - Size: 83.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 47 - Forks: 12

naturalis/trait-geo-diverse-dl

Ecological Niche Modelling Using Deep Learning

Language: Jupyter Notebook - Size: 10.2 GB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 14 - Forks: 4

dondealban/tutorial-qgis-maxent

A short tutorial for creating a species distribution model using QGIS, R, and MaxEnt.

Language: HTML - Size: 18.2 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 33 - Forks: 15

adamlilith/enmSdmPredImport 📦

Testing methods for measuring variable importance in species distribution models

Language: R - Size: 96.5 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 1

cjcarlson/elton

🌼🐝 Bayesian joint species distribution models with networks 🐝🌼

Language: R - Size: 256 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1

osgeokr/SDM4PyDev

SDM for Python Developers

Language: Jupyter Notebook - Size: 18.9 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 5

miguel-porto/eicm

Explicit Interaction Community Models

Language: R - Size: 232 KB - Last synced at: 25 days ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 1

elgabbas/Conservation-Prioritisation-Sensitivity

R code used for the analyses of the paper: Spatial conservation prioritisation in data-poor countries: a quantitative sensitivity analysis using different taxa

Language: HTML - Size: 28.3 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

lukasgabor/SDMs-affected-by-positional-uncertainty-in-occurrences-can-still-be-ecologically-interpretable

This repository provides R scripts for reproducing virtual species generating, modeling species distribution and final figures related with published manuscript.

Language: R - Size: 49.8 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

LLeiSong/itsdm

Purely presence-only species distribution modeling with isolation forest and its variations such as Extended isolation forest and SCiForest.

Language: R - Size: 13.3 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 1

ghuertaramos/ENMOD 📦

Ecological Niche Modeling on Docker

Language: R - Size: 167 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

adamlilith/varecia 📦

Modeling vulnerability of ruffed lemurs to climate change and deforestation

Language: R - Size: 1.61 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 2

peterbat1/ENM_Taylor_Diagram

Application of Taylor Diagrams to Ecological Niche Models/Species Distribution Models

Language: R - Size: 40 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Thilagavijayan/Data_Science_Fundamentals

In this Repository, The fundamentals of Datascience like python libraries and its exercises, Machine learning algorithms and lot more stuffs will be uploaded

Language: Jupyter Notebook - Size: 208 KB - Last synced at: 12 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

anthonysnead/Rivulus-Future-Suitability-Niche-Model

A repository for all code and data associated with "Predicting the In-Between: Present and Future Habitat Suitability of an Intertidal Euryhaline Fish".

Language: HTML - Size: 2.44 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

SarveshSridhar/Frog-Occurrence-Prediction-Using-Species-Distribution-Modelling

Species Distribution Model for predicting the occurrence of frogs in the region of Australia

Language: Jupyter Notebook - Size: 1.42 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

cmunozr/invasoras_mx

Language: R - Size: 853 KB - Last synced at: 3 months ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

BiologicalRecordsCentre/DECIDE_SDMs

Species distributions models of butterflies 🦋 and moths for the DECIDE project. GB coverage, 100m resolution.

Language: R - Size: 1.35 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

Rekyt/ssdms_saturation_richness

:notebook: Companion repository to Grenié et al. 2020 Published in Ecological Indicators

Language: R - Size: 8.34 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

oliviergimenez/2speciesoccupancy

Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked

Language: R - Size: 675 KB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 4

RamKaushikR/GeoLifeCLEF-2019

Jupyter Notebook and working notes of the GeoLifeCLEF 2019 challenge.

Language: Jupyter Notebook - Size: 2.47 MB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

madaan-nikhil/Specie-distribution-modelling-using-Maxent-classifier

Web application for specie distribution modelling using maxent classifier

Language: HTML - Size: 3.42 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 1

joaofgoncalves/Msc_MarianaOrsini_MEA

R code for Mariana Orsini's MSc thesis

Language: R - Size: 91.8 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

xavi-rp/MinBAR

Package to calculate Minimum Background Area for SDMs

Language: R - Size: 3.05 MB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 1

boyanangelov/awesome-sdm

A curated list of awesome species distribution modeling frameworks, libraries and software.

Size: 3.91 KB - Last synced at: 5 days ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 1

jmargrove/ForestFloodingSensitivityAnalysis

Elevational variation in tropical trees analysis

Language: R - Size: 121 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

Octoberweather/ENM-code

R code used in my master's thesis at CSUDH

Language: R - Size: 14.6 KB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

FelixNoessler/QCB_Black_Kite

Occupancy model of the Black Kite in Spain under current and future predicted climate scenarios

Language: R - Size: 43.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

stdinstdout/autocorr

Python package for correcting spatial irregularities in plant and animal species.

Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

luciensc/EcolSimulation

Spatially explicit simulation of species distribution (theoretical ecology). WIP.

Language: Python - Size: 8.92 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

daniel-furman/ensemble-climate-projections

Climate ecology analyses for my conference proceedings at the SICB '21 Meeting (Society for Integrative and Comparative Biology).

Language: Jupyter Notebook - Size: 14.2 MB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

lophital/residualsofsdm

:smirk:       

Size: 348 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

nandahkrishna/GeoLifeCLEF2019

Submission to the GeoLifeCLEF 2019 Species Recommendation Challenge

Language: Jupyter Notebook - Size: 3.35 MB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 1

jscavetta95/maxentools

A set of high level functions to provide easy training and evaluation of Maxent species distribution models.

Language: R - Size: 160 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

joaofgoncalves/envSample Fork of SaraVarela/envSample

A set of functions used to subsample species records in the environmental space

Language: R - Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

Pakillo/Carex.bipolar

Research compendium for "Niche shifts after long-distance dispersal events in bipolar sedges (Carex, Cyperaceae)"

Language: R - Size: 16.2 MB - Last synced at: 5 days ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

OdilonVieira/chamaeza_distribution

Data used in: "Estudo da distribuição do gênero chamaeza no estado do Rio de Janeiro"

Language: R - Size: 29.3 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

boyanangelov/sdmexplain

Explainable Species Distribution Modeling

Language: R - Size: 1.25 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

rsh249/vegdistmod

R library for the analysis of spatial biodiversity data. Including tools to estimate climate from species coexistence including CRACLE and Thompson's Mutual Climatic Range technique.

Language: R - Size: 4.33 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

DomHenry/sdm-pipeline

Data analysis pipeline for species distribution models of threatened and endemic vertebrates

Language: R - Size: 144 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

Sachagobeyn/SDMIT

Species Distribution Model Identification Tool

Language: Python - Size: 6.54 MB - Last synced at: 8 months ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1

phytomosaic/ngnn

Nonlinear Gradient Nearest Neighbors -- a method for predicting multivariate species compositions from environmental variables based on individualistic but possibly coordinated species responses.

Language: R - Size: 50.8 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2

victoriachistolini/Honors

Research in SDM Modeling using Machine Learning

Language: TeX - Size: 32.2 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

howl-anderson/sdmvspecies

SDMvspecies is R package to create virtual species (virtual data or artificial data) for SDM (Species Distribution Modelling)

Language: R - Size: 667 KB - Last synced at: 2 months ago - Pushed at: over 9 years ago - Stars: 1 - Forks: 1

k8hertweck/Callisia

Preliminary mapping and SDM

Language: HTML - Size: 5.28 MB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0