rvalavi/blockCV

The blockCV package creates spatially or environmentally separated training and testing folds for cross-validation to provide a robust error estimation in spatially structured environments. See

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pbs-assess/sdmTMB

:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

Language: R - Size: 335 MB - Last synced: 4 days ago - Pushed: 6 days ago - Stars: 174 - Forks: 23

danddr/USE

A R package to perform uniform sampling in the environmental space

Language: R - Size: 25.9 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 5 - Forks: 1

sjevelazco/flexsdm

Useful tools for constructing species distribution models

Language: R - Size: 97.6 MB - Last synced: 4 days ago - Pushed: 13 days ago - Stars: 47 - Forks: 5

eugeneyau/Tropical-Asian-Butterfly-Distribution

Language: R - Size: 2.82 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 1 - Forks: 0

gauravcodepro/metagenomics-abundance-normalize

a metagenomics abundance normalizer which will take the abundance OTUs file and gives you a normalized ratio for plotting of the species

Language: Python - Size: 12.7 KB - Last synced: 19 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0

plantnet/GeoLifeCLEF

GeoLifeCLEF challenge toolkit and starter code

Language: Jupyter Notebook - Size: 74 MB - Last synced: 27 days ago - Pushed: 3 months ago - Stars: 55 - Forks: 28

TheoreticalEcology/s-jSDM

Scalable joint species distribution modeling

Language: R - Size: 45.5 MB - Last synced: 17 days ago - Pushed: about 2 months ago - Stars: 62 - Forks: 14

iiasa/ibis.iSDM

Modelling framework for creating Integrated SDMS

Language: R - Size: 400 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 19 - Forks: 1

Marcelo-Kenji-Noda/sdm-amazona-vinacea

Species Distribution Model Pipeline

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LLeiSong/eleDistribution

Multi-scale modeling for conservation and connectivity of African savanna elephant in Tanzania

Language: R - Size: 22.3 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

PEM-Humboldt/biomodelos-sdm

BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

Language: R - Size: 205 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 11 - Forks: 3

ConsBiol-unibern/SDMtune

Performs Variables selection and model tuning for Species Distribution Models (SDMs). It provides also several utilities to display results.

Language: R - Size: 198 MB - Last synced: 27 days ago - Pushed: 2 months ago - Stars: 23 - Forks: 7

earth-chris/elapid

Species distribution modeling tools, including a python implementation of Maxent

Language: Python - Size: 6.38 MB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 44 - Forks: 5

peterbat1/fitMaxnet

Workflow to fit niche models to species occurrence data using glmnet via maxnet package

Language: R - Size: 16.2 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 1

Arthur-Provost/WSL_Bern_fire_susceptibility

This project relates to a methodological report on canton Bern forest fire modelling and mitigation strategies.

Language: R - Size: 84 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

atlantichabitatmodels/communityofpractice

A website to hold information and resources for the Atlantic Canada Species At Risk Habitat Modelling Community of Practice

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djordjepmihajlovic/Machine-Learning-Species-Analysis

A comprehensive species distribution analysis using various machine learning methods

Language: Python - Size: 105 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

emmachollet/ComparSDMsQuantifOverfitSuppInterpr_DataPackage

Package with data, scripts and plots for manuscript "A comparison of machine learning and statistical species distribution models: when overfitting hurts interpretation" (submitted to Ecological Modelling, Dec 2022)

Language: R - Size: 290 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 4 - Forks: 1

daniel-furman/Python-species-distribution-modeling

A brief Python tutorial for geospatial classification.

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timcdlucas/INLAutils

R package providing utilities for INLA

Language: R - Size: 7.47 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 25 - Forks: 11

cjcarlson/embarcadero

🌲🌉 Species distribution models with Bayesian additive regression trees

Language: R - Size: 83.9 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 47 - Forks: 12

pedrohbraga/SpeciesDistribModelling-in-R-Workshop

Workshop on Introduction to Species Distribution Modelling, devolped by Pedro Henrique Braga and Julia Nordlund.

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HemingNM/SESraster

Randomization of presence/absence species distribution raster data for calculating standardized effect sizes and testing null hypothesis.

Language: R - Size: 4.05 MB - Last synced: 24 days ago - Pushed: 10 months ago - Stars: 5 - Forks: 0

naturalis/trait-geo-diverse-dl

Ecological Niche Modelling Using Deep Learning

Language: Jupyter Notebook - Size: 10.2 GB - Last synced: 4 months ago - Pushed: almost 5 years ago - Stars: 14 - Forks: 4

dondealban/tutorial-qgis-maxent

A short tutorial for creating a species distribution model using QGIS, R, and MaxEnt.

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adamlilith/enmSdmPredImport 📦

Testing methods for measuring variable importance in species distribution models

Language: R - Size: 96.5 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

cjcarlson/elton

🌼🐝 Bayesian joint species distribution models with networks 🐝🌼

Language: R - Size: 256 KB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 1

lifewatch/sdmpredictors

A compilation of environmental data for species distribution modelling

Language: R - Size: 44 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 27 - Forks: 5

r-a-dobson/dynamicSDM

An R package for species geographical distribution and abundance modelling at high spatiotemporal resolution

Language: R - Size: 28.7 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 4 - Forks: 2

osgeokr/SDM4PyDev

SDM for Python Developers

Language: Jupyter Notebook - Size: 18.9 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 5

miguel-porto/eicm

Explicit Interaction Community Models

Language: R - Size: 232 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 6 - Forks: 1

elgabbas/Conservation-Prioritisation-Sensitivity

R code used for the analyses of the paper: Spatial conservation prioritisation in data-poor countries: a quantitative sensitivity analysis using different taxa

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lukasgabor/SDMs-affected-by-positional-uncertainty-in-occurrences-can-still-be-ecologically-interpretable

This repository provides R scripts for reproducing virtual species generating, modeling species distribution and final figures related with published manuscript.

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LLeiSong/itsdm

Purely presence-only species distribution modeling with isolation forest and its variations such as Extended isolation forest and SCiForest.

Language: R - Size: 13.3 MB - Last synced: 4 months ago - Pushed: 12 months ago - Stars: 3 - Forks: 1

ghuertaramos/ENMOD 📦

Ecological Niche Modeling on Docker

Language: R - Size: 167 KB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

adamlilith/varecia 📦

Modeling vulnerability of ruffed lemurs to climate change and deforestation

Language: R - Size: 1.61 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 2

guilhermechicarolli/PDPD

Repositório dos dados do projeto de PDPD da UFABC "Impacto das mudanças climáticas no mismatch espacial em uma interação de polinização morcego-planta endêmica"

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peterbat1/processALA

R package to give easy access to ALA plant occurrence data

Language: R - Size: 39.9 MB - Last synced: 4 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

peterbat1/ENM_Taylor_Diagram

Application of Taylor Diagrams to Ecological Niche Models/Species Distribution Models

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Thilagavijayan/Data_Science_Fundamentals

In this Repository, The fundamentals of Datascience like python libraries and its exercises, Machine learning algorithms and lot more stuffs will be uploaded

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anthonysnead/Rivulus-Future-Suitability-Niche-Model

A repository for all code and data associated with "Predicting the In-Between: Present and Future Habitat Suitability of an Intertidal Euryhaline Fish".

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SarveshSridhar/Frog-Occurrence-Prediction-Using-Species-Distribution-Modelling

Species Distribution Model for predicting the occurrence of frogs in the region of Australia

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lance-waller-lab/envi

Environmental Interpolation using Spatial Kernel Density Estimation

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cmunozr/invasoras_mx

Language: R - Size: 853 KB - Last synced: 4 months ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

zoonproject/zoon

The zoon R package

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cmerow/rangeModelMetadata

Language: R - Size: 13.2 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 5 - Forks: 1

BiologicalRecordsCentre/DECIDE_SDMs

Species distributions models of butterflies 🦋 and moths for the DECIDE project. GB coverage, 100m resolution.

Language: R - Size: 1.35 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

Rekyt/ssdms_saturation_richness

:notebook: Companion repository to Grenié et al. 2020 Published in Ecological Indicators

Language: R - Size: 8.34 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

oliviergimenez/2speciesoccupancy

Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked

Language: R - Size: 675 KB - Last synced: 2 months ago - Pushed: about 4 years ago - Stars: 3 - Forks: 4

RamKaushikR/GeoLifeCLEF-2019

Jupyter Notebook and working notes of the GeoLifeCLEF 2019 challenge.

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madaan-nikhil/Specie-distribution-modelling-using-Maxent-classifier

Web application for specie distribution modelling using maxent classifier

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joaofgoncalves/Msc_MarianaOrsini_MEA

R code for Mariana Orsini's MSc thesis

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xavi-rp/MinBAR

Package to calculate Minimum Background Area for SDMs

Language: R - Size: 3.05 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

boyanangelov/awesome-sdm

A curated list of awesome species distribution modeling frameworks, libraries and software.

Size: 3.91 KB - Last synced: 6 days ago - Pushed: over 4 years ago - Stars: 5 - Forks: 1

jmargrove/ForestFloodingSensitivityAnalysis

Elevational variation in tropical trees analysis

Language: R - Size: 121 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 1

FelixNoessler/QCB_Black_Kite

Occupancy model of the Black Kite in Spain under current and future predicted climate scenarios

Language: R - Size: 43.9 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

stdinstdout/autocorr

Python package for correcting spatial irregularities in plant and animal species.

Language: Python - Size: 9.77 KB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

luciensc/EcolSimulation

Spatially explicit simulation of species distribution (theoretical ecology). WIP.

Language: Python - Size: 8.92 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

daniel-furman/ensemble-climate-projections

Climate ecology analyses for my conference proceedings at the SICB '21 Meeting (Society for Integrative and Comparative Biology).

Language: Jupyter Notebook - Size: 14.2 MB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

lophital/residualsofsdm

:smirk:       

Size: 348 KB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

nandahkrishna/GeoLifeCLEF2019

Submission to the GeoLifeCLEF 2019 Species Recommendation Challenge

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jscavetta95/maxentools

A set of high level functions to provide easy training and evaluation of Maxent species distribution models.

Language: R - Size: 160 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

joaofgoncalves/envSample Fork of SaraVarela/envSample

A set of functions used to subsample species records in the environmental space

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Pakillo/Carex.bipolar

Research compendium for "Niche shifts after long-distance dispersal events in bipolar sedges (Carex, Cyperaceae)"

Language: R - Size: 16.2 MB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

OdilonVieira/chamaeza_distribution

Data used in: "Estudo da distribuição do gênero chamaeza no estado do Rio de Janeiro"

Language: R - Size: 29.3 KB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

boyanangelov/sdmexplain

Explainable Species Distribution Modeling

Language: R - Size: 1.25 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

rsh249/vegdistmod

R library for the analysis of spatial biodiversity data. Including tools to estimate climate from species coexistence including CRACLE and Thompson's Mutual Climatic Range technique.

Language: R - Size: 4.33 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

DomHenry/sdm-pipeline

Data analysis pipeline for species distribution models of threatened and endemic vertebrates

Language: R - Size: 144 KB - Last synced: 4 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

ahasverus/bioclimaticatlas

Website of the Tundra Nunavik project

Language: R - Size: 578 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

phytomosaic/ngnn

Nonlinear Gradient Nearest Neighbors -- a method for predicting multivariate species compositions from environmental variables based on individualistic but possibly coordinated species responses.

Language: R - Size: 50.8 KB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 2

victoriachistolini/Honors

Research in SDM Modeling using Machine Learning

Language: TeX - Size: 32.2 MB - Last synced: 4 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

howl-anderson/sdmvspecies

SDMvspecies is R package to create virtual species (virtual data or artificial data) for SDM (Species Distribution Modelling)

Language: R - Size: 667 KB - Last synced: 25 days ago - Pushed: over 8 years ago - Stars: 1 - Forks: 1

k8hertweck/Callisia

Preliminary mapping and SDM

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