francescoapg/mathbio

Supporting material

Language: HTML - Size: 354 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0

WildlifeDatasets/wildlife-datasets

WildlifeDatasets: An open-source toolkit for animal re-identification

Language: Jupyter Notebook - Size: 232 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 98 - Forks: 11

jkharv/HigherOrderFoodwebs.jl

Use hypergraphs to create foodweb models which include non-trophic effects

Language: Julia - Size: 382 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 0

chenyangkang/stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

Language: Python - Size: 441 MB - Last synced at: 1 day ago - Pushed at: 2 months ago - Stars: 20 - Forks: 1

FelixNoessler/GrasslandTraitSim.jl

Simulation model of the biomass of grassland plant species

Language: Julia - Size: 338 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 3 - Forks: 0

wildeco/wildeco.github.io

A webpage for data analytics in biodiversity conservation

Language: HTML - Size: 13.2 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

itsMidNightsw/PhD_Public

Code related to my PhD's work

Language: R - Size: 25.4 KB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 0

marco-willi/camera-trap-classifier

Automatically identify animals in camera trap images by training a deep neural network.

Language: Python - Size: 15.8 MB - Last synced at: 8 days ago - Pushed at: almost 6 years ago - Stars: 51 - Forks: 17

Neo-Cybernetics/Neo-Cybernetics-Main

Official Github Repository for Neo-Cybernetics, a discipline that introduces a holistic paradigm for understanding the driving forces and flows of systems, be they natural, technological or sociocultural.

Size: 2.49 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

bognabognabogna/microbial_lag_calculator

The microbial Lag duration calculator code (package miLAG and shiny)

Language: R - Size: 2.02 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 2

Nosa-Osawe/Mosquitoes-modelling-

I am using physicochemical properties of mosquitoe larval habitat to predict their abundance and co-occurence, in southern Nigeria.

Language: R - Size: 3.8 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

sdtaylor/pyPhenology

Plant phenology models in python with a scikit-learn inspired API

Language: Python - Size: 1.87 MB - Last synced at: 6 days ago - Pushed at: almost 2 years ago - Stars: 32 - Forks: 12

npechl/acoRn

R package designed for exclusion-based parentage assignment

Language: R - Size: 105 KB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

iafelipe/pysagem

Simulate and visualize biological invasions in dynamic landscapes

Language: Python - Size: 5.39 MB - Last synced at: 17 days ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

surh/vibrio_squid

Mathematical model(s) for the symbisis between Allivibrio fisheri and Euprymna scalopes

Language: R - Size: 17.6 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sivx76/R

Computational Modeling of Ecology and Evolution. Topics will include natural selection, genetic drift, community ecology, game theory and chaos.

Size: 40 KB - Last synced at: 12 months ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

jrudar/LANDMark

Implementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.

Language: Jupyter Notebook - Size: 882 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 5 - Forks: 3

EcoDynIZW/EcoDynIZW.github.io

We are the Department of Ecological Dynamics of the Leibniz IZW! This repository stores the distill webpage of the department.

Language: HTML - Size: 418 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 2

matteorizzuto/AnimalVectorNutrientFlow

Code to replicate the numerical analyses of the model used in Rizzuto et al. (2024) Ecological Modelling.

Language: Mathematica - Size: 27.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

zoppellarielena/Exercises-for-Physical-Models-for-Living-Systems

This repository contains some numerical analysis regarding physical models applied to both Ecology and Neuroscience, written in Python.

Language: Jupyter Notebook - Size: 4.89 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

RPDaniels/CPlant

A visualizer of companion plants relationships made with Python and SQLite

Language: Python - Size: 19.2 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 0

Quetzal-framework/quetzal-CoaTL

A toolbox for C++ devs wanting to build geospatial population genetics simulators !

Language: C++ - Size: 43.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 1

tmptrash/irma

Digital organisms ecology system experiment

Language: JavaScript - Size: 6.18 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 14 - Forks: 4

nicholasjclark/Mediterranean-Fishes-MRF

R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)

Language: R - Size: 36.1 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 2

Waschina/Eutropia

Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space

Language: R - Size: 20.7 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

ykawahar/EcologyAI-DeepReinforcementLearning

A public reupload of AI Q-Learning Project

Language: Python - Size: 87.9 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Tungdil01/pdeco Fork of volpatto/pdeco

Welcome to the repository for the mathematical models and code associated with the research paper 'A New Modelling Framework for Predator-Prey Interactions: A Case Study of an Aphid-Ladybeetle System' published in Ecological Informatics in 2023. This repository provides the source code and data used in the study.

Language: Jupyter Notebook - Size: 119 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Tungdil01/IntraguildPredation

Welcome to the repository for the mathematical models and code associated with the research paper 'Rapid Spread Agents May Impair Biological Control In A Tritrophic Food Web With Intraguild Predation' published in Ecological Complexity in 2021. This repository provides the source code used in the study.

Language: Jupyter Notebook - Size: 35.2 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

baudenam/FireMed-Baudena-et-al-2020-New-Phytologist

This repository provides the code and data to model fire and drought effects in the Mediterranean forests, as in the paper Baudena et al 2020, New Phytologist

Language: Fortran - Size: 58.6 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

rvanmazijk/Cape-vs-SWA

Open access repository for (some) data-sets, reproducible analyses, conference slides and manuscript for a publication based on my BSc Hons project (in press in Journal of Biogeography).

Language: R - Size: 945 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

egouldo/notebook_elise_gould

PhD Research Notebook

Language: HTML - Size: 10.4 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

egouldo/ReproEcoDecisions

Are conservation and ecological decision support tools reproducible?

Language: TeX - Size: 1.26 MB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 1

raquelCastromonte/Gizzard-Shad-IPM

Gizzard Shad IPM during an REU at University of Wisconsin - La Crosse

Size: 883 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

andrew-1234/sdm-usecase-master

Workflow for preparing ecoacoustic species annotations and raster layers to use in species distribution modelling, with R

Language: R - Size: 1.96 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

egouldo/ReplicatingEcoConsDecisions

Case study in replicating decisions in ecology and conservation

Language: TeX - Size: 33.2 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

s-cunningham/GeeseBehavior-Weather

Code for manuscript "Time-varying effects of local weather on behavior and probability of breeding deferral in two Arctic-nesting goose populations" (Oecologia; 10.1007/s00442-022-05300-x)

Language: R - Size: 35.7 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

lg11235/mixotroph-adaptive-dynamics

Provides Mathematica code to generate results from "Modeling the Metabolic Evolution of Mixotrophic Phytoplankton in Response to Rising Ocean Surface Temperatures"

Language: Mathematica - Size: 12.9 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

pbentkowski/MHC_Evolution

Evolution of the major histocompatibility complex genes repertoire and number of copies in an agent-based modelling approach

Language: C++ - Size: 46.8 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 1

tmptrash/irma4

Fourth version of irma artificial life simulator on rust

Language: Rust - Size: 447 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Abhikumar86/my-website

Language: HTML - Size: 31.7 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

phytomosaic/ecole

School of ecology package for teaching ecological tasks, algorithms and model fitting.

Language: R - Size: 405 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

dominicpalmer/spatial-tangled-nature

Simulating tumour development in two and three dimensions using the framework of the spatial Tangled Nature model

Language: C++ - Size: 302 KB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

luciensc/EcolSimulation

Spatially explicit simulation of species distribution (theoretical ecology). WIP.

Language: Python - Size: 8.92 MB - Last synced at: 30 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

metasoarous/odum

Program for running simulations on Odum graphs

Language: Clojure - Size: 49.8 KB - Last synced at: 12 days ago - Pushed at: almost 8 years ago - Stars: 5 - Forks: 0

ledelaney/GeneralEcologyMaterials

:chart_with_upwards_trend: Markdown files and R code for BIOS331 (General Ecology) modeling assignments.

Language: R - Size: 421 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

trenchproject/TrenchRmodules

Physical processes in ecosystems: Educational modules introducing biophysical ecology and use of the TrEnChR package.

Language: HTML - Size: 149 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

atyre2/raretrans

Bayesian Priors for Matrix Population Models

Language: R - Size: 9.55 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 1

LidongMo/FrostRiskProject

Language: HTML - Size: 11.3 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1

boyanangelov/sdmexplain

Explainable Species Distribution Modeling

Language: R - Size: 1.25 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

HeatherARobinson/Mapping-and-spatial-code

Codes used for spatial analysis incorporating WORLDCLIM open source climate data variables

Language: R - Size: 11.7 KB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1

brouwern/BIOSC_1120

Course website for BIOSCI 1120: Biostatistics at the University of Pittsburgh Department of Biological Sciences

Language: HTML - Size: 2.84 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1

atyre2/HABITAT

Rcpp interface to the individual based model used in Tyre et al 2001

Language: C++ - Size: 61.5 KB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0