GitHub topics: systematic-reviews

Repositories

asreview/asreview

Active learning for systematic reviews

Language: Python - Size: 135 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 715 - Forks: 128

ESHackathon/eviatlas

A tool for visualising geographical data in systematic maps

Language: R - Size: 4.43 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 30 - Forks: 10

This project focuses on automating the analysis and reporting of bibliometric data, specifically targeting the annual production of academic articles. The primary goal is to understand trends, anomalies, and patterns in bibliometric data through a combination of statistical modeling and exploratory data analysis.

Language: R - Size: 37.8 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 2 - Forks: 0

ijmarshall/robotreviewer

Automatic synthesis of RCTs

Language: Python - Size: 620 MB - Last synced at: 3 days ago - Pushed at: almost 3 years ago - Stars: 149 - Forks: 88

NLeSC/litstudy

LitStudy: Using the power of Python to automate scientific literature analysis from the comfort of a Jupyter notebook

Language: Python - Size: 18 MB - Last synced at: 10 days ago - Pushed at: 9 months ago - Stars: 184 - Forks: 54

drshahizan/research-material

Information related to research material that can be used by postgraduate students

Size: 161 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 46 - Forks: 18

ropensci/medrxivr

Access and search medRxiv and bioRxiv preprint data

Language: R - Size: 194 KB - Last synced at: 7 days ago - Pushed at: 2 months ago - Stars: 57 - Forks: 8

WojciechKusa/systematic-review-datasets

[NeurIPS 2023] CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews

Language: Python - Size: 31.4 MB - Last synced at: 2 days ago - Pushed at: 9 months ago - Stars: 22 - Forks: 2

asreview/asreview-server-stack

Docker compose for setting up ASReview server with authentication

Size: 27.3 KB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 4 - Forks: 1

victorqribeiro/terms

Get related terms to a word.

Language: JavaScript - Size: 7.81 KB - Last synced at: 21 days ago - Pushed at: over 5 years ago - Stars: 8 - Forks: 0

asreview/asreview-artwork

Artwork for the ASReview project

Language: HTML - Size: 480 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 22 - Forks: 9

asreview/asreview-makita

Workflow generator for simulation studies using the command line interface of ASReview LAB

Language: Python - Size: 8.19 MB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 41 - Forks: 18

EPPI-Centre/ER4

EPPI-Reviewer and connected Web Apps

Language: TSQL - Size: 298 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 2 - Forks: 0

drzhelnov/zheln.github.io

Welcome to Zheln! We build the world’s first evidence outlet. Methods repo: https://github.com/p1m-ortho/qs-global-ortho-search-queries

Language: HTML - Size: 25.4 MB - Last synced at: about 8 hours ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

ammirsm/automatic-pancake

Active learning agent-based-simulation for systematic reviews and other types of technology assisted review (TAR) which will include PDF documents and other meta-datas in itself and it's based on both fulltext-screening decisions and title-screening decisions.

Language: Python - Size: 1.82 MB - Last synced at: 9 days ago - Pushed at: 12 months ago - Stars: 8 - Forks: 1

ProjectDossier/cruise-screening

[CIKM 2023] CRUISE search engine for conducting literature reviews

Language: Python - Size: 651 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 13 - Forks: 4

clbustos/buhos

Web based systematic literature review software

Language: JavaScript - Size: 46.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 35 - Forks: 9

Rensvandeschoot/software-overview-machine-learning-for-screening-text

The repository aims to create an overview and comparison of software used for systematically screening large amounts of textual data using machine learning.

Size: 55.7 KB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 13 - Forks: 6

cecoeco/PRISMA.jl

Generate checklists and flow diagrams based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA)

Language: TypeScript - Size: 6.01 MB - Last synced at: 10 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 1

MedlineTranspose/medlinetranspose.github.io

Medline Transpose project

Language: HTML - Size: 375 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 0

nealhaddaway/livingPRISMAflow

Produce living systematic review flow diagrams that conform to PRISMA checklist standards

Language: R - Size: 2.2 MB - Last synced at: 20 days ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 0

nealhaddaway/ROSES_flowchart

Tool for producing ROSES compliant flow diagrams for systematic reviews and maps

Language: R - Size: 764 KB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 1

nealhaddaway/predicter

A Tool to Estimate the Time Needed to Conduct a Systematic Review or Systematic Map

Language: R - Size: 37.1 KB - Last synced at: 20 days ago - Pushed at: over 2 years ago - Stars: 15 - Forks: 0

mcguinlu/PRISMA-Checklist

This repo contains the code supporting the PRISMA 2020 Checklist web app.

Language: R - Size: 1.35 MB - Last synced at: 18 days ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0

rmetaverse/metaverse

Package to provide consistent evidence synthesis workflow in R

Language: R - Size: 5.56 MB - Last synced at: 5 months ago - Pushed at: almost 5 years ago - Stars: 52 - Forks: 10

ielab/searchrefiner

Systematic Review Query Visualisation and Understanding Interface

Language: HTML - Size: 32.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 13 - Forks: 4

oxlel/evidencemaps Fork of AndrewIOM/thalloo-starter

Evidence maps produced by the Oxford Long-Term Ecology Lab

Size: 13.6 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

asreview/asreview-datatools

Tool to preprocess datasets for ASReview

Language: Python - Size: 123 KB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 16 - Forks: 12

GriffithUniLibrary/systematic-review-screening

Self-paced tutorial on the screening stage of a systematic-style review

Language: JavaScript - Size: 9.26 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

GriffithUniLibrary/SSR-Develop-your-search-strategy

Rise resource supporting systematic reviews

Language: JavaScript - Size: 6.16 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

asreview/asreview-academy

This repository contains open teaching materials on using ASReview

Language: CSS - Size: 1.34 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 11 - Forks: 11

DQ-Zhang/refchaser

Written in python, for checking reference lists in systematic reviews and literature reviews, helps with reference list searching both backward&forward by extracting references and creating search queries, ranks articles by relevance to improve screening efficiency, download full-text pdf of research articles in batch.

Language: Python - Size: 34.8 MB - Last synced at: 9 months ago - Pushed at: almost 5 years ago - Stars: 21 - Forks: 3

sp12102001/Systematic-Synthesizer

The application aims to automate the systematic review process, leveraging natural language processing (NLP), machine learning (ML), and data extraction techniques to streamline research design, literature review, and data synthesis.

Language: TypeScript - Size: 1.03 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

scuhci/google-play-scraper-gui

Node.js Electron GUI for Scraping the Google Play Store.

Language: JavaScript - Size: 181 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

coraliewilliams/splitref

R functions to perform and automate tasks for the screening of papers for systematic reviews and meta-analysis using Rayyan software

Language: R - Size: 37.7 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

asreview/paper-guidelines-KIFMS

Scripts to run simulations of systematic reviews with ASReview for 14 datasets openly published on the Dutch database for medical guidelines.

Language: Jupyter Notebook - Size: 23.9 MB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

mcguinlu/robvis

A package to quickly visualise risk-of-bias assessment results

Language: HTML - Size: 83.9 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 54 - Forks: 20

oliviergimenez/appendix_capturerecapture_review

Analyses, R code and data for review of 2009-2019 research on capture-recapture

Language: HTML - Size: 90.6 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

asreview/semantic-clusters

Semantic Clustering for ASReview Datasets

Language: Python - Size: 5.66 MB - Last synced at: 6 months ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 2

asreview/asreview-wordcloud

ASReview extension to generate wordcloud from data files.

Language: Python - Size: 3.53 MB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 15 - Forks: 3

asreview/asreview-covid19 📦

Extension that adds Covid-19 related datasets to ASReview

Language: Python - Size: 109 MB - Last synced at: 8 months ago - Pushed at: about 3 years ago - Stars: 27 - Forks: 7

hscells/transmute

PubMed/Medline query transpiler

Language: Go - Size: 816 KB - Last synced at: 9 days ago - Pushed at: over 5 years ago - Stars: 7 - Forks: 2

Ngocnguyenlab/PV-output-forecast-analysis

Providing and analyzing the database of PV output forecast errors to examine what drives the accuracy of PV output forecasts

Size: 256 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

LSLeClercq/ABCal

Author Bias Computation and Scientometric Plotting

Language: Python - Size: 1.74 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

victorqribeiro/dtf

DTF - Duplicate Thumbnail Files - A method to identify duplicate files.

Language: Python - Size: 64.5 KB - Last synced at: about 1 month ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 1

Research-Intelligence/Research-Intelligence

A collection of Research Intelligence methods and workflows

Language: TeX - Size: 50.8 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 3

CPernet/meta_meditation

raw metadata files, scripts and derived files for 'Mindfulness related changes in grey matter: A Systematic Review and Meta-analysis'

Language: R - Size: 9.21 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ayanglab/How-to-Perform-Technical-Systematic-Review-And-Meta-Analysis-Tutorial

Here we summarise a tutorial for systematic review and meta analysis for technical development (e.g., using deep learning) for digital healthcare projects.

Language: R - Size: 133 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

nealhaddaway/nealhaddaway.github.io

Neal Haddaway's Photography and Research Website

Language: SCSS - Size: 1.52 GB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

egouldo/ReproEcoDecisions

Are conservation and ecological decision support tools reproducible?

Language: TeX - Size: 1.26 MB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 1

asreview/automated-systematic-review-simulations 📦

Simulations for the https://github.com/asreview/asreview

Language: Python - Size: 90.8 KB - Last synced at: 11 months ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 3

Xiaowen-JI/Semi-automation-of-systematic-review-of-clinical-trials-in-medical-psychology-with-BERT-models

We employed pre-trained BERT models (distillBERT, BioBert, and SciBert) for text-classifications of the titles and abstracts of clinical trials in medical psychology. The average score of AUC is 0.92. A stacked model was then built by featuring the probability predicted by distillBERT and keywords of search domains. The AUC improved to 0.96 with F1, precision, and recall increasing to 0.95, 0.94, and 0.96 respectively. Training sample size of 100 results in the most cost-effective performance.

Language: Jupyter Notebook - Size: 4.7 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 1

anjani-dhrangadhariya/distant-PICO

Language: Jupyter Notebook - Size: 5.98 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

WojciechKusa/VoMBaT

[SIGIR 2023] VoMBaT: A Tool for Visualising Evaluation Measure Behaviour in High-Recall Search Tasks

Language: Python - Size: 61.5 KB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

acaklovic/Thesis-Comparison-of-feature-extractors-using-ASReview

Project to examine if state-of-the-art feature extractors (i.e., transformers like RoBERTa, MPNET, and SPECTER) can outperform classical feature extractors (i.e., tf-idf and Doc2Vec) when classifying systematic reviews as relevant or irrelevant (using the ASReview software)

Language: Jupyter Notebook - Size: 4.03 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

anjani-dhrangadhariya/rob-preliminary-annotation

documenting annotations for risk of bias

Language: HTML - Size: 274 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

UnB-CIDACS/observatorio-jats

Revisão estatística e sistemática de artigos científicos disponíveis em formato JATS

Language: HTML - Size: 47 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 3 - Forks: 1

RPanczak/TEMPO_syst-rev

R code and data to reproduce analyses of the systematic review by Panczak et al. (2020). Part of the TEMPO project.

Language: HTML - Size: 18.7 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

djarenas/Inter-Rater

Inter-rater quantifies the reliability between multiple raters who evaluate a group of subjects. It calculates the group quantity, Fleiss kappa, and it improves on existing software by keeping information about each user and quantifying how each user agreed with the rest of the group. This is accomplished through permutations of user pairs. The software was written in Python, can be run in Linux, and the code is deposited in Zenodo and GitHub. This software can be used for evaluation of inter-rater reliability in systematic reviews, medical diagnosis algorithms, education applications, and others.

Language: Python - Size: 71.3 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 3