Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: fisheries-management

Blue-Matter/Slick

Slick Decision Analysis

Language: R - Size: 627 MB - Last synced: about 10 hours ago - Pushed: about 10 hours ago - Stars: 2 - Forks: 0

sizespectrum/mizer

Multi-species size-based ecological modelling in R

Language: R - Size: 213 MB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 35 - Forks: 41

dgoto2/FLBEIAgadget-test

A Management Strategy Evaluation (MSE) framework using FLBEIA and Gadget

Language: R - Size: 5.7 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

dgoto2/TransDynFish

Data and code used in "Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management"

Language: R - Size: 3.22 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

fishR-Core-Team/FSA

FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

Language: R - Size: 94.2 MB - Last synced: 17 days ago - Pushed: 9 months ago - Stars: 63 - Forks: 20

DTUAqua/spict

Stochastic surplus Production model in Continuous Time

Language: R - Size: 107 MB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 25 - Forks: 19

Shyentist/fish-r-man

A bundle of analytics tools for fisheries scientists

Language: R - Size: 215 MB - Last synced: 24 days ago - Pushed: 2 months ago - Stars: 14 - Forks: 3

mcsiple/mmrefpoints

A package for simulating marine mammal abundance and calculating reference points.

Language: R - Size: 2.11 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 5

jcdoll79/IntroBayes

Computer code to accompany "An Introduction to Bayesian Modeling and Inference for Fisheries Scientists

Language: R - Size: 59.6 KB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 1

afsc-gap-products/GAPsurvey

Catch, Length, and Specimen Data Import Program Instructions for at sea survey data for AFSC's Gulf of Alaska and Bering Sea groundfish surveys.

Language: R - Size: 4.18 GB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 1

dgoto2/mse4bias

A management strategy evaluation (MSE) framework for persistent estimation bias in stock assessment

Language: R - Size: 74.4 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

dgoto2/SEIBMFoodWeb

A spatially explicit individual-based food web model for a large ecosystem

Language: IDL - Size: 12.2 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

dgoto2/SpatioTempFishProduction

Estimation of spatial-temporal variability of fish biomass and production using survey data

Language: IDL - Size: 1.44 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

dgoto2/SEIBMRiverFish

A spatially explicit (1D) individual-based model for large river fish

Language: IDL - Size: 10.8 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

frabas/FishSpatOverlayTool

A spatial overlay tool in R for estimating EU fisheries activities inside or outside spatial restriction areas

Language: HTML - Size: 854 MB - Last synced: 3 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

cfree14/aquacast

Expanding ocean food production under climate change

Language: R - Size: 389 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 5 - Forks: 4

fishR-Core-Team/RFishBC

This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.

Language: R - Size: 163 MB - Last synced: 17 days ago - Pushed: 6 months ago - Stars: 13 - Forks: 1

jepa/EmergingFish 📦

This repository supports the research "Timing and magnitude of climate driven range shifts in transboundary fish stocks challenge their management"

Language: TeX - Size: 95.4 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

Gulf-IEA/WFS_bulletins

Oceanographic bulletins for the West Florida Shelf produced from regular cruises

Size: 43.9 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

jcdoll79/BayesYPR

Bayesian Yield-Per-Recruit Model in Stan

Language: R - Size: 39.1 KB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 0

jepa/Transboundary_Chapter 📦

Transboundary marine ressources in Canada

Language: HTML - Size: 23.8 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

Rare-Technology/FMA_Dashboard

Fisheries Management Assessment Tool

Language: R - Size: 66.2 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

frabas/BENTHIS_2020

BENTHIS WP2 Workflow revisited. Split in several parts: i) obtain a gridded swept area from interpolating bottom contacting gears tracks, and ii) obtain spatial origin of catches (landings) by dispatching landings back to interpolated VMS positions, iii) compute fuel use from VMS-derived or AIS-derived effort data and fuel use models, iv) score fisheries depending on their relative fuel use intensity

Language: R - Size: 8.75 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

bstaton1/kusko-bayes-tool

R code for the Shiny interface for the Kuskokwim River Chinook salmon In-season Bayesian Risk Assessment Tool (i.e., "the P* Model")

Language: R - Size: 22.5 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 2

NickDulvy/SharkReassessment

Analysis and code to support the paper "Overfishing drives over one third of all sharks and rays toward a global extinction crisis" published in Current Biology on 6th September 2021

Language: JavaScript - Size: 5.05 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

pedersen-fisheries-lab/csdm

Bayesian Catch Saturation-Depletion Models

Language: C++ - Size: 25.8 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

MathieuGenu/precAppGraph

make precautionary approach graph easily with R

Language: R - Size: 3.67 MB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

ano/ports

Electronic fisheries port management platform

Language: CSS - Size: 6.79 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

bstaton1/ddown

Source code to build my dissertation using bookdown

Language: TeX - Size: 96.9 MB - Last synced: 4 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

GMFMC/Lobster-closedAreas-Flexdash

Language: HTML - Size: 744 KB - Last synced: 4 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

Related Keywords
fisheries-management 30 fisheries 11 r 9 fisheries-stock-assessment 6 shiny 5 climate-change 4 stock-assessment 4 simulation-modeling 4 population-dynamics 4 bayesian-inference 2 dashboard 2 r-package 2 fish 2 agent-based-modeling 2 individual-based-modelling 2 spatially-explicit-models 2 rmarkdown 2 management-strategy-evaluation 2 gis 1 data-visualization 1 data-analysis 1 transboundary 1 canada 1 recruit-model 1 estimate-yield 1 water-quality 1 oceanography 1 harmful-algal-blooms 1 transbounudary 1 shared-fish-stocks 1 mariculture 1 aquaculture 1 vulnerable-marine-ecosystems 1 marine-protected-areas 1 fish-stocks-management 1 shovelnose-sturgeon 1 fish-population-dynamics 1 geolocation 1 flexdashboard 1 dissertation 1 bookdown 1 port-state-measures 1 fisheries-systems 1 ggplot2 1 shark 1 risk-assessment 1 rays 1 overfishing 1 global 1 extinction 1 mapping-fisheries 1 fuel-use-intensity 1 carbon-footprint 1 non-profit 1 ngo 1 marine-mammals 1 bycatch 1 marine-ecosystem 1 open-source 1 marine-biology 1 globalfishingwatch 1 global-fishing-watch 1 fishing-effort 1 fisheries-research 1 simulation 1 spict 1 size-structure 1 species-interactions 1 recruitment 1 population-model 1 multilevel-models 1 transport-equation 1 demographic-analysis 1 river 1 survey-data 1 monitoring 1 lake-fish-biomass 1 fish-biomass 1 data-processing 1 mse 1 lake-erie 1 r-shiny 1 food-webs 1 eutrophication 1 ecosystem-modeling 1 ecosystem 1 ecosystem-model 1 simulation-framework 1 retrospective-bias 1 noaa-fisheries 1 noaa 1 growth-curve-models 1