GitHub topics: fisheries

Repositories

nmfs-ost/ss3-source-code

The source code for Stock Synthesis (SS3).

Language: C++ - Size: 26.9 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 43 - Forks: 20

skdevelopers/punjabfisheries.gov.pk

Punjab Fisheries Department – Project Owner Lead Developer: Mian Salman (CTO, Teqtronis Systems) AI Model: KurmaAI/AQUA-7B | Open AI Framework: Laravel

Language: Blade - Size: 37 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 1

ices-tools-dev/echoSMs

Making acoustic scattering models available to fisheries and plankton scientists via the world wide web

Language: Python - Size: 6.95 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 13 - Forks: 5

adossantos-jr/psa-multispecies

A routine for estimating preliminary vulnerability to fishing for multiple species at once

Language: R - Size: 75.2 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

adossantos-jr/spatial-fishing-risk-mapper

A routine for mapping high-risk fishing areas based on species vulnerability

Language: R - Size: 137 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

frabas/DISPLACE_GUI

A Scientific Research Software for Spatial Fisheries and Natural Resource Management

Language: C - Size: 47 MB - Last synced at: 5 days ago - Pushed at: 8 days ago - Stars: 10 - Forks: 3

r4ss/r4ss

files for r4ss package

Language: R - Size: 41.5 MB - Last synced at: 4 days ago - Pushed at: 9 days ago - Stars: 45 - Forks: 38

wrf/misc-analyses

other analyses of diverse topics including food, demography, tourism, mapping, and more

Language: R - Size: 47.4 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 4 - Forks: 0

danStich/anadrofish

R package for modeling anadromous fish population responses to dams

Language: R - Size: 147 MB - Last synced at: 2 days ago - Pushed at: 11 days ago - Stars: 3 - Forks: 1

manuelcoffill/AL-Spotted-Seatrout-stock-assessment

Files associated with the 2025 stock assessment of the Alabama stock of Spotted Seatrout

Language: Visual Basic 6.0 - Size: 37.1 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0

This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.

Language: R - Size: 163 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 1

fishR-Core-Team/FSAdata

FSAdata contains data for use in common fisheries stock analyses. See installation instructions further below.

Language: R - Size: 13.6 MB - Last synced at: 5 days ago - Pushed at: about 2 years ago - Stars: 13 - Forks: 15

fishR-Core-Team/FSA

FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

Language: R - Size: 107 MB - Last synced at: about 9 hours ago - Pushed at: 18 days ago - Stars: 70 - Forks: 24

danStich/shadia

shadia: dam passage performance standard models for R

Language: R - Size: 46.3 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 1

nmfs-ost/ss3-user-examples

Stock synthesis example models for users

Language: Scheme - Size: 597 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 3 - Forks: 5

Sustainable-Fisheries-Wales/lobsterWales2023

Code for data processing, model-fitting, and model diagnostics for European lobster stock assessment (Wales)

Language: R - Size: 254 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 1

noaa-afsc/mvobservr-testbench

Testing the multivariate observer effects (MOE) framework

Size: 199 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

flr/mse

Tools for running Management Strategy Evaluations using FLR

Language: R - Size: 327 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 4 - Forks: 5

QuantMarineEcoLab/quantmarineecolab.github.io Fork of greenelab/lab-website-template

Lab website

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pbs-assess/gfsynopsis

:fish: A reproducible data synopsis report for over 100 species of British Columbia groundfish

Language: TeX - Size: 11.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 17 - Forks: 1

afsc-gap-products/GAPsurvey

Catch, Length, and Specimen Data Import Program Instructions for at sea survey data for AFSC's Gulf of Alaska and Bering Sea groundfish surveys.

Language: R - Size: 4.76 GB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 3

jschulien/ALAN-LakeWashington-

This repository contains MATLAB scripts used for analyzing artificial light at night (ALAN) across the Lake Washington and Lake Sammamish basins. The scripts process in-situ irradiance data and satellite-based VIIRS Day/Night Band (DNB) radiance to explore spatial and temporal patterns in nighttime light.

Language: MATLAB - Size: 26 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

NOAA-FIMS/old_site

Home webpage of the FIMS development team.

Language: HTML - Size: 14.8 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 0 - Forks: 1

NOAA-CEFI-Portal/CEFI-info-hub-list

This list is mirroring all links provided on the CEFI information hub

Language: Python - Size: 73.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 3

mhpob/otndo

A package to understand data from the Ocean Tracking Network

Language: R - Size: 12.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 1

jepa/straddling_cc

Climate change drives shifts in straddling fish stocks in the world’s ocean

Language: R - Size: 75.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

mhpob/matos

API for the Mid-Atlantic Acoustic Telemetry Observing System

Language: R - Size: 9.78 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 4

chrischizinski/wildlife-grad

Comprehensive platform for tracking and analyzing wildlife & fisheries graduate assistantship opportunities. Features automated scraping, ML classification, interactive dashboards, and weekly data updates via GitHub Actions.

Language: Python - Size: 4.42 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

holden-harris/CEFI-GOMCLIM-EcospaceOutputs

Raw data and code to show outputs from the US Gulf-wide Ecospace Model (USGWEM)

Language: R - Size: 25.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 1

nmfs-ost/ss3-test-models

Stock Synthesis models used for testing

Language: Scheme - Size: 8.42 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 1

flr/doc

FLR documentation: tutorials, manuals, examples and others

Language: R - Size: 411 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 10 - Forks: 10

sizespectrum/mizer

Multi-species size-based ecological modelling in R

Language: R - Size: 235 MB - Last synced at: 2 days ago - Pushed at: 18 days ago - Stars: 39 - Forks: 45

WUR-ABE/automatic_discard_registration

Automatic discard registration in cluttered environments using deep learning and object tracking: class imbalance, occlusion, and a comparison to human review

Language: Python - Size: 4.23 MB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

nmfs-ost/AA-SI_PublicPage

Public-facing information about the Active Acoustics Strategic Initiative

Language: Lua - Size: 1.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

ss3sim/ss3sim

An R package for stock-assessment simulation with Stock Synthesis

Language: R - Size: 107 MB - Last synced at: 4 days ago - Pushed at: 4 months ago - Stars: 39 - Forks: 29

poseidon-fisheries/POSEIDON

A model of fish, fishers, and fisheries.

Language: HTML - Size: 557 MB - Last synced at: 4 days ago - Pushed at: 19 days ago - Stars: 14 - Forks: 7

rmk118/morphmat

Modeling Size at Maturity Using Morphometric Data

Language: R - Size: 7.68 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

NCEAS/ca-mpa

OPC California MPA project

Language: HTML - Size: 638 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 1

boettiger-lab/sarsop

:package: A library for solving POMDPs

Language: C++ - Size: 6.76 MB - Last synced at: 11 days ago - Pushed at: 5 months ago - Stars: 11 - Forks: 8

rcavieses/Pescapp-web

Es una app web que ayuda a gestionar la trazabilidad de la flota pesquera menor

Language: Python - Size: 2.05 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

NOAA-CEFI-Portal/cefi-cookbook

the CEFI data cookbook is aiming to provide useful information and code snippet to help user on accessing the useful data/information related to Climate, Ecosystems, and Fisheries topics

Language: Jupyter Notebook - Size: 242 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 5

firms-gta/shiny_compare_fisheries_datasets

Shiny app to compare fisheries datasets (e.g. catches) time series

Language: R - Size: 9.15 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 1

stevenranney/AnglerCreelSurveySimulation

Simulate a fisheries creel survey.

Language: R - Size: 341 KB - Last synced at: 27 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

flr/FLSRTMB

Fitting and analyzing stock-recruitment relationships with TMB in FLR

Language: R - Size: 2.63 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

SEFSC/CEFI-GoMCLIM-DataSynth

Data and code used for the US Gulf of Mexico Wide Ecosystem Model (GWEM) developed in Ecopath with Ecosim and Ecospace

Language: HTML - Size: 579 MB - Last synced at: about 2 months ago - Pushed at: 7 months ago - Stars: 6 - Forks: 3

d2gex/lbmstoolbox

A toolbox that integrates and provides various length-based methods for small-scale fisheries assessment, offering enhanced features.

Language: R - Size: 72.3 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

Shyentist/fish-r-man

A bundle of analytics tools for fisheries scientists

Language: R - Size: 215 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 3

marchtaylor/FLIBM

FLIBM is individual-based model for the simulation of fish stock dynamics

Language: R - Size: 31.8 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 4 - Forks: 0

SchmidtDSE/afscgap

Python-based tools for NOAA AFSC GAP marine species surveys data

Language: Python - Size: 4.2 MB - Last synced at: about 19 hours ago - Pushed at: 28 days ago - Stars: 5 - Forks: 4

JBris/bayes-growth-bdd

Demonstrating the use of behavior-driven development (BDD) to Bayesian growth models for assumption tracking.

Language: Python - Size: 29.8 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

GMACS-project/GMACS_Assessment_code

The source code for GMACS

Language: Smarty - Size: 47.5 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 4 - Forks: 6

ropensci/ramlegacy

R :package: to download, cache and read in different versions of the RAM Legacy Stock Assessment Data Base, an online compilation of stock assessment results for commercially exploited marine populations from around the world.

Language: R - Size: 49.3 MB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 6

EmilyMarkowitz-NOAA/FishR101

This acts as the landings site for the Jan-Feb 2021 R Workshop for RACE GAP organized by Caitlin Allen Akselrud (@CaitlinAkselrud-NOAA), Emily Markowitz (@EmilyMarkowitz-NOAA), and others. https://emilymarkowitz-noaa.github.io/FishR101/index.html

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noaa-afsc/sdmgamindex

R package for calculating survey indices by age from DATRAS exchange data. Adapted from Casper W. Berg @casperwberg.

Language: R - Size: 1.41 GB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1

GMACS-project/gmr

An R package to work with GMACS

Language: R - Size: 1.16 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

Sustainable-Fisheries-Wales/crabWales

Code for data processing for crab stock assessment (Wales)

Language: R - Size: 37.1 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

haddonm/MQMF

An R package to accompany the new book 'Using R for Modelling and Quantitative Methods in Fisheries'

Language: R - Size: 690 KB - Last synced at: 16 days ago - Pushed at: about 2 years ago - Stars: 11 - Forks: 7

mikaeldui/openfisheries-dotnet-client

The OpenFisheries.org project seeks to advance the practice of data science in fisheries. The project does this by consolidating global fisheries datasets through an open web platform and viewing this data through a lens of modern analytics.

Language: C# - Size: 18.6 KB - Last synced at: 27 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

mikaeldui/united-kingdom-cefas-dotnet-client

The Centre for Environment, Fisheries and Aquaculture Science is an executive agency of the United Kingdom government Department for Environment, Food and Rural Affairs. It carries out a wide range of research, advisory, consultancy, monitoring and training activities for a large number of customers around the world.

Language: C# - Size: 116 KB - Last synced at: 9 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

iqbal-ipb/FisheriesInJulia

Tutorial mengolah data menggunakan Julia, dikhususkan tentang data Perikanan. Bagaimana menghitung nilai CPUE (Catch Per Unit Effort) dan nilai Persen Mature dari data perikanan sederhana

Language: Jupyter Notebook - Size: 2 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 1

ingridasemenec/wonderpusoctopus

Prediction of chlorophyll concentration in the ocean aids in assessing ecosystem health, advising fisheries management, and enhancing our understanding of Earth's biogeochemical processes. By employing deep learning methods, we will develop models to analyze the relationship between chlorophyll concentration and biogeochemical features

Language: Jupyter Notebook - Size: 194 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

Rare-Technology/FMA_Dashboard

Fisheries Management Assessment Tool

Language: R - Size: 96.4 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

d2gex/utpbdomesel

An R package to generate dome-shaped retention curves for stocks exploited by Galician small-scale fisheries

Language: R - Size: 104 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Aquatic-Food-Composition-Database/aquatic_foods_nutrient_database

Language: R - Size: 381 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

ropensci/rfisheries

package for interacting with fisheries databases at openfisheries.org

Language: R - Size: 761 KB - Last synced at: 5 days ago - Pushed at: over 5 years ago - Stars: 26 - Forks: 9

mcabanillast/Registro-de-pesca

Este aplicativo registra dados de viagens de pesca, incluindo identificação da embarcação, esforço de pesca, capturas, descartes e capturas não intencionais. Visa apoiar na coleta de dados de pesca da frota de longline nas Grandes Unidades Oceânicas do Brasil

Language: TypeScript - Size: 670 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

d2gex/utpbwlfq

A tiny R package to generate weight and length frequency matrices for Galician small-scale fisheries

Language: R - Size: 54.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

nmfs-ost/ss3-flowcharts 📦

Flowcharts for the tpl code

Size: 1.12 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

calbertsen/multi_SAM

Connecting single-stock assessment models through correlated survival

Language: R - Size: 1.99 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 5 - Forks: 2

henryhansen/Lota-lota-and-other-biota

Personal website for Henry H Hansen

Language: HTML - Size: 2.72 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

WorldFishCenter/peskas.org

Peskas' platform website

Language: HTML - Size: 6.48 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

nina-rynne/FishMIP-modelskill

Code for "A skill assessment framework for the Fisheries and Marine Ecosystem Models Intercomparison Project" by Rynne et al., (2024)

Language: R - Size: 131 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

Craig44/SpatialSablefishAssessment

A R package that contains TMB stock assessment models and auxiliary functions. Initially it was built for Sablefish, but could be fit to any stock that exhibits sexual dimorphism, has two fishing fleets and generalized number of spatial regions.

Language: C++ - Size: 10.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

EmilyMarkowitz-NOAA/NMFSReports 📦

Write smart R Markdown reports with these basic and easy functions!

Language: R - Size: 30.3 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 16 - Forks: 3

jcdoll79/IntroBayes

Computer code to accompany "An Introduction to Bayesian Modeling and Inference for Fisheries Scientists

Language: R - Size: 59.6 KB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

cfree14/datalimited2

More stock assessment methods for data-limited fisheries

Language: R - Size: 86.3 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 15 - Forks: 4

Microhive/BSc-Thesis-Fisheries-Learning-Simulation

Language: C# - Size: 159 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 0

openem-team/openem

Open Source Electronic Monitoring Library

Language: Python - Size: 1.23 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 11 - Forks: 4

alko989/s6model

Data-poor fish stock assessment using the single species, size structured, steady state model

Language: R - Size: 58.2 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 3

pamdx/FM_imputation

Repository for the FAO-OECD fishery and aquaculture employment data imputation tool.

Language: R - Size: 6.34 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

cfree14/aquacast

Expanding ocean food production under climate change

Language: R - Size: 389 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 4

sabdulrazzaque/Project_Bycatch_Assessment_Cetaceans

Preliminary analysis of the questionnaire for face-to-face surveys to the targeted fisher groups engaged in gillnet coastal fisheries.

Language: Jupyter Notebook - Size: 7.91 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Rare-Technology/Fisheries-Dashboard

Fisheries production dashboard

Language: Python - Size: 383 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

NickG-dfo/FCL

An R package designed for fast closed-loop projections of fish populations

Size: 74.7 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

droglenc/RcourseMidwest2018 📦

Materials for the Introductory Fisheries Analyses with R workshop at 2018 Midwest Fisheries and Wildlife Conference (Milwaukee, WI)

Language: R - Size: 3.56 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2

jepa/OC_Transboundary 📦

Repository supporting the project related to transboundary stocks of North America under climate change part of the Ocean Canada Parthnership

Language: TeX - Size: 45 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

jepa/FishForVisa 📦

Main repository for project "Marine species do not need visas: the transboundary nature of the world’s exploited marine species" (FishForVisa)

Language: TeX - Size: 52.5 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

jepa/AcrossBoundaries 📦

Repository to support Palacios-Abrantes et al 2023

Size: 54.3 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

falcianij/fishcarbon

Code associated with the L&O paper "Optimizing fisheries for blue carbon management: Why size matters"

Language: R - Size: 4.78 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

kalilamali/FishDNA_pipeline

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

Size: 10.6 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

kamataryo/thesis

Kamata, Ryo (2011). Growth characteristics and anti-predator performance of hatchery-reared larval Japanese anchovy, Engraulis japonicus: effects of temperature and food density [Thesis, Kyoto University]. Kyoto University, Graduated school of Agriculture, Division of Applied Bioscience, Field of Fisheries Ecology (Unpublished)

Size: 6.58 MB - Last synced at: 6 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0