GitHub topics: trimmomatic
shencangsheng/Trimmomatic-pigz
A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.
Language: Java - Size: 131 KB - Last synced at: 27 days ago - Pushed at: 5 months ago - Stars: 16 - Forks: 0
humzaashraf1/RNASeq-Analysis-of-Replicative-Aging
RNA-seq analysis from FASTQ to differential gene-expression using open-source tools
Language: Jupyter Notebook - Size: 95.7 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
Moha-cm/RNAseq-Analysis
Bulk Rna-seq Analysis
Language: HTML - Size: 4.41 MB - Last synced at: about 2 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
julianneyang/transcriptomicsonhoffman
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
Language: R - Size: 20.9 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Language: Shell - Size: 190 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
mansikath/whole-genome-sequencing-pipeline
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
Language: HTML - Size: 1.96 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
anita-brzoza/university_projects
The repository contain directories of projects done during the bioinformatics degree program
Language: HTML - Size: 894 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
wucc009/Platelet_transcriptome_fastq_data_processing
血小板转录组fastq数据处理
Language: Shell - Size: 22.5 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
hanielcedraz/BAQCOM
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
Language: R - Size: 102 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 7 - Forks: 1
mehdimerbah/WES
Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.
Language: HTML - Size: 4.2 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0
kalilamali/FishDNA_pipeline
Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.
Size: 10.6 MB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
