GitHub topics: varscan
oicr-gsi/varscan
varscan repo contains code for Varscan workflow
Language: WDL - Size: 105 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0
PoisonAlien/varscan_accessories
accessory scripts for processing varscan somatic/copynumber outputs.
Language: Python - Size: 9.77 KB - Last synced at: about 21 hours ago - Pushed at: over 7 years ago - Stars: 9 - Forks: 10
sfragkoul/Varscan2VCF Fork of scchess/Varscan2VCF
Convert VarScan output to VCF format
Language: Python - Size: 3.85 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Language: Shell - Size: 190 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
nyuhuyang/RNAseq_pipeline
Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R
Language: HTML - Size: 3.71 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1
MatveySprindzuk/GenomicsSoftware
software for processing tuberculosis whole genome data. interface to the BWA, VarScan, SamTools etc.
Size: 2.85 MB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
HaoKuo/NGS-pipeline
GATK and VARSCAN analysis pipeline
Language: Python - Size: 18.6 KB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 0
