GitHub topics: htseq

Repositories

guma44/GEOparse

Python library to access Gene Expression Omnibus Database (GEO)

Language: Jupyter Notebook - Size: 13.3 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 152 - Forks: 50

datasnakes/RNASeek

A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

Language: HTML - Size: 48.7 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

datasnakes/htseq-count-cluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

Language: Python - Size: 71.3 KB - Last synced at: 1 day ago - Pushed at: about 3 years ago - Stars: 4 - Forks: 0

nyuhuyang/RNAseq_pipeline

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

Language: HTML - Size: 3.71 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

gih0004/RNA_seq_pipeline

RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2

Language: Shell - Size: 36.1 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

mattgalbraith/htseq2-docker-singularity

Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity

Language: Dockerfile - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

BreisOne/RNA-seq_scripts

Bash scripting workflow to perform RNA-seq analysis in a HPC Cluster. Alignment with STAR, count matrix generation with HTSeq and the merge of the different count matrix.

Language: Shell - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0