GuyTeichman/RNAlysis

RNA sequencing analysis software

Language: Python - Size: 613 MB - Last synced: about 13 hours ago - Pushed: 1 day ago - Stars: 121 - Forks: 13

jawa23bio/RNA-Seq

RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.

Language: HTML - Size: 985 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 1 - Forks: 0

galantelab/freddie

Tool to identify chimeric events from RNA-Seq data

Language: Shell - Size: 22.8 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 2 - Forks: 0

rnabioco/rhumba

Snakemake pipelines for RNA sequencing data

Language: C - Size: 21.2 MB - Last synced: 7 days ago - Pushed: 11 months ago - Stars: 2 - Forks: 2

gaolabtools/scNanoGPS

Single cell Nanopore sequencing data for Genotype and Phenotype

Language: Python - Size: 27 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 32 - Forks: 1

yjx1217/EvoSeq_RNA

An in-house bioinformatic framework for bulk RNA-seq analysis

Language: HTML - Size: 1000 Bytes - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

kristinassong/RNAseq

A Snakemake pipeline to analyze RNA-seq expression data

Language: Python - Size: 83 KB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 0

angai4/FYP

RNA-seq pipeline automation scripts

Language: Perl - Size: 674 KB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 1 - Forks: 0

HKU-BAL/Clair3-RNA

Clair3-RNA - a long-read small variant caller for RNA sequencing data

Language: Python - Size: 327 KB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 7 - Forks: 0

urmi-21/pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Language: Python - Size: 204 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago - Stars: 76 - Forks: 26

PaulaRS/snakemake_transcriptome_workflow

Reusable workflow for de novo transcriptome assemblies from paired-end illumina reads, annotation and quality checks

Language: CAP CDS - Size: 182 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

giuliospinozzi/arpir

Automatic RNA-Seq Pipelines with Interactive Report

Language: R - Size: 202 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 24 - Forks: 11

niekwit/rna-seq-star-tetranscripts

Snakemake workflow for transposable element RNA-Seq using TEtranscripts

Language: R - Size: 12.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

zqfang/snakeflow

bioinfo workflow based on snakemake

Language: Python - Size: 7.94 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 7 - Forks: 7

KrajShuffle/Persister-Single-Cell-RNA-Seq-Data-Analysis

Single Cell RNA-seq analysis of Persister Cells to unearth key stress pathways and core, differential genes of those respective pathways

Language: R - Size: 3.45 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

meeranhussain/RNASeq_DEGseq_Snakemake_NO-REPLICATES

Workflow for differential gene expression analysis for non-replicate samples using DEGseq

Language: R - Size: 20.5 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

meeranhussain/RNASeq_Deseq2_Snakemake

Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline

Language: R - Size: 44.9 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

michalbukowski/rnaseq-pipeline-2

Simple Nextflow RNA-Seq pipeline

Language: Nextflow - Size: 871 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

uc-bd2k/GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

Language: HTML - Size: 38.2 MB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 46 - Forks: 19

tluquez/QUARS

QUAlity control for RNA_Seq, a nextflow pipeline

Language: Groovy - Size: 2.58 MB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 2

jumphone/SPRINT

SNP-free RNA editing Identification Toolkit

Language: Python - Size: 10.8 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 40 - Forks: 16

zavolanlab/PAQR2

Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.

Language: Python - Size: 36.5 MB - Last synced: 28 days ago - Pushed: over 1 year ago - Stars: 7 - Forks: 0

PistilliLab/RNAseq-pipeline

Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

Language: Shell - Size: 22.5 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

uc-bd2k/GREP2

GEO RNA-seq Experiments Processing Pipeline

Language: R - Size: 2.11 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 19 - Forks: 10

Lexogen-Tools/quantseqpool_analysis

Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.

Language: Shell - Size: 6.37 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 2

Lexogen-Tools/sars-cov-2_analysis

An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.

Language: Shell - Size: 51 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

hanielcedraz/BAQCOM

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

Language: R - Size: 102 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 7 - Forks: 1

eonurk/RNA-seq-differential-analyses-guideline

A quick recap of widely used differential analyses methods in R for RNA-seq experiments

Size: 320 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 10 - Forks: 3

czheluo/Teach-Bioinformatics-R-dataviz

Materials for "Teaching Bioinformatics and R for dataviz course" June-August 2019 in Majorbio

Language: R - Size: 28 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 7 - Forks: 4

BleekerLab/snakemake_rnaseq

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

Language: Python - Size: 85.4 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 10 - Forks: 5

ACastanza/seqformat

RNA-seq Preprocessing for GSEA

Language: R - Size: 6.04 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

10adavis/DESeq2_fGSEA_Flow

This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.

Language: R - Size: 7.22 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

LappalainenLab/RNApipeline

Language: Shell - Size: 43.9 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 5 - Forks: 1

wegnerce/smk_rnaseq

Snakemake workflow for the processing of RNAseq data

Language: Python - Size: 19.7 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

Chester75321/Aldosteronism

Source code of the paper entitled "The sequential data of differential transcription expression of heart in aldosterone-infusion mice"

Language: R - Size: 24.5 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sivkri/miRNASeq-DE-Analysis-QC

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Language: R - Size: 110 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

gih0004/RNA_seq_pipeline

RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2

Language: Shell - Size: 36.1 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 1

Lioscro/alaska-parse

Automated and friendly RNA-seq analysis (migrated to Parse Server)

Language: JavaScript - Size: 4.02 MB - Last synced: about 1 month ago - Pushed: 12 months ago - Stars: 1 - Forks: 0

Marval96/RNAseq_uivc

This repository is for differential expression analysis of RNAseq bulk data.

Language: Jupyter Notebook - Size: 8.31 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

deeprob/rnaseq_analysis

Girirajan Lab RNA-seq analysis pipeline

Language: Python - Size: 206 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 4

cgodatascience/circRNA

Classification of RNA-Seq samples using circRNA expression

Language: HTML - Size: 41.8 MB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

Taiji-pipeline/Taiji

All-in-one analysis pipeline

Language: Haskell - Size: 4.05 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 31 - Forks: 8

Sherman-1/Hackathon

RNAseq analysis pipeline project for Paris-Saclay's University Master AMI2B

Language: Nextflow - Size: 84.7 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 2

NCBI-Hackathons/SPeW

Automatic Packaging and Distribution of Bioinformatics Pipelines

Language: Python - Size: 904 KB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 26 - Forks: 8

weng-lab/rnaseq-workflow

RNA-seq pipeline, based on the ENCODE uniform processing pipeline

Language: Kotlin - Size: 2.1 MB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

pentalpha/r-peridot

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

Language: Java - Size: 18.9 MB - Last synced: 10 days ago - Pushed: over 4 years ago - Stars: 4 - Forks: 0

egaffo/CirComPara

:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Language: R - Size: 16 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 14 - Forks: 11

n-shenoy/lymphoblastoid-de

Complete sequencing pipeline for differential gene expression analysis of bulk RNA from human lymphoblastoid cell line.

Language: HTML - Size: 4.14 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

DKFZ-ODCF/RNAseqWorkflow

Roddy RNA-seq Workflow Plugin

Language: Perl - Size: 819 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 5 - Forks: 4

GrosseLab/VipeR_HIF1alpha

Viper is a Snakemake workflow, aimed at performing the RNA-seq workflow of the paper 'Causes and consequences of a glutamine induced normoxic HIF1 activity for the tumor metabolism', Kappler et al. (2019) in a reproducible and automated manner

Language: R - Size: 13.1 MB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 5 - Forks: 0

NehaSontakk/RNA-sequencing-fastq-to-differential-gene-expression

RNA sequencing processing and analysis to find differential expression

Language: Jupyter Notebook - Size: 6.06 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

lokapal/K562.hemin

Bioinformatic scripts for the manuscript concerning interchromosomal interaction and gene expression patterns of K562 cells treated by hemin

Language: R - Size: 5.62 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

PalMuc/TransPi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Language: Nextflow - Size: 48.6 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 24 - Forks: 14

navduhan/pyseqrna

pySeqRNA: a python-based package for RNASeq data analysis

Language: Python - Size: 1.11 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 2

vivekruhela/miRPipe

miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

Language: Python - Size: 99.4 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 3

apredeus/multi-bacpipe

A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments

Language: Perl - Size: 2.15 MB - Last synced: 12 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 2

milescsmith/rnaseq_targets_pipeline

An R {targets}-based pipeline for processing and generating reports for RNAseq data

Language: R - Size: 97.1 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

francescopatane96/RNA-seq_Pipeline

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

Language: Jupyter Notebook - Size: 31.3 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ishamada/CRC

Language: R - Size: 131 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ishamada/CellChat

Language: R - Size: 41 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

schosio/CHOLAR

Automated RNA-seq pipeline for lncRNA indentification

Language: Shell - Size: 33.7 MB - Last synced: 3 months ago - Pushed: 6 months ago - Stars: 9 - Forks: 1

ishamada/RNA-seq-workflow-gene-level

RNA-seq workflow: gene-level exploratory analysis and differential expression.

Language: R - Size: 3.91 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

markonyango/quasi-express

Language: JavaScript - Size: 3.98 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

LieberInstitute/SPEAQeasy

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

Language: HTML - Size: 770 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 6 - Forks: 5

RuzhangZhao/mixhvg

The package mixhvg uses mixture of highly variable gene selection methods to improve gene selection.

Language: R - Size: 5.02 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 0

dohlee/snakemake-kallisto-sleuth

Kallisto-sleuth pipeline in snakemake.

Language: Python - Size: 2.93 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

cellgeni/rnaseq

Fast RNAseq pipeline

Language: Groovy - Size: 7.95 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 8 - Forks: 4

furkanmtorun/rna-seq-workflow 📦

🛠 under active development | RNA-Seq Workflow in Jupyter Notebook

Language: Jupyter Notebook - Size: 30.3 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1

MysoreSparrow/Annalena_TotalRNASeqPipeline

Repo for TotalRNASeq Pipeline Development for AG Hornef, UK Aachen

Language: R - Size: 143 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

vallenderlab/rnaseq-tuxedo-suite

An RNASeq snakemake workflow using the Tuxedo suite.

Language: Python - Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

pengkenlim/LSTrAP-denovo

LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.

Language: Python - Size: 1.64 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

nedaghohabi/Colorectal_Cancer_Subsetting Fork of collaborativebioinformatics/Disease_subsetting

Colorectal cancer CMSs subtyping and personalized medication recommendation based on RNA seq pathway analysis

Language: Jupyter Notebook - Size: 651 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

CasillasAlba/GeneFlow

GeneFlow is a scalable and flexible software library that encompasses data acquisition methods, preprocessing techniques, data analytics, data visualization, and Machine Learning algorithms that can be applied to genomic data.

Language: Jupyter Notebook - Size: 8.94 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

mhjiang97/RNASeqFlow

A small python tool for RNA-seq workflows

Language: Python - Size: 302 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 5 - Forks: 0

williamjeong2/snakemake_RNA-seq

A repository for RNA-seq workflow

Language: R - Size: 12.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

pentalpha/r-peridot-gui

The power of the R's differential gene expression analysis packages, with no programming required.

Language: Java - Size: 62.2 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 3 - Forks: 0

vondoRishi/4-RNA-seq

A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds

Language: HTML - Size: 3.62 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 7 - Forks: 3

cbp44/snakemake-workflow-rna-seq

Snakemake workflow for performing an RNA-seq analysis

Language: Python - Size: 6.9 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

upendrabhattarai/denovo-RNA-Seq-On-Nesi

This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.

Size: 39.1 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

MillerLab-CPHG/RNA_Seq-Flow

RNA-Seq Analysis pipeline using Snakemake workflow

Language: Python - Size: 330 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

EmoryIntegratedComputationalCore/Methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Language: R - Size: 18 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2

evolomics-group/rna-seq-pipeline

In development scripts for EvolOMICs group's NGS Data Analysis Pipeline

Language: Shell - Size: 3.48 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 0

ziul-bio/Rna-Seq_Workflow

Neste projeto descrevo diferentes parâmetros e opções para a execução de programas necessários à análise de Rna-Seq, além de incluir informações e opniões que possam facilitar a escolha da melhor opção que se adque à análise em questão.

Language: R - Size: 3.45 MB - Last synced: 11 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

kopalgarg/RNA-seq-SRA

Language: wdl - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

bio-TAGI/Hackathon

Analysis of mutations at codon 625 of SF3B1 gene in uveal melanoma

Language: R - Size: 3.53 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 3

WestGermanGenomeCenter/circrna_detection

circs_snake : a snakemake-based circRNA detection workflow

Language: Python - Size: 19.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

kevincjnixon/autoDE

Automated DE analysis by DESeq2

Language: R - Size: 38.1 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

arkanivasarkar/RNAseq-Data-Analysis-Pipeline

Pipeline for analyzing RNAseq data of human and mouse - beginner friendly with minimal user inputs

Language: R - Size: 1.52 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

anishchakka/rnaseq

This repository contains all the scripts necessary to perform RNA-Seq analysis on HTC CRC Pitt.

Language: Shell - Size: 20.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

villegar/RuNAs

RNA-seq pipeline

Language: Python - Size: 19.4 MB - Last synced: 9 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

Kur1sutaru/16SrDNA_stats Fork of tiagofalconlopes/16SrDNA_stats

A simple code to analyze OTU table and RNA-seq normalization in R

Language: R - Size: 14.7 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

sing-group/dewe

DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.

Language: Java - Size: 1.38 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 3 - Forks: 0

tjbencomo/rna-pipeline

RNA sequencing pipeline for Stanford's Sherlock HPC cluster

Language: C++ - Size: 90.9 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 2

rstats-tartu/simulate-rnaseq

Workflow to simulate an RNA-seq reads and perform DE-analysis

Language: Python - Size: 26.4 KB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Language: Shell - Size: 418 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

biomystery/RNA-seq-snakemake-pipeline

A snakemake RNAseq pipeline using kalisto. Adapted from https://github.com/crazyhottommy/RNA-seq-analysis/tree/master/RNA-seq-snakemake-pipeline

Language: Python - Size: 1.97 MB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

bissessk/Whole-Genome-Bioinformatic-Analysis-of-Skin-from-Three-Immunologically-Diverse-Mouse-Models

Performed a differential gene expression analysis with RNA-seq on three immunologically diverse mouse models. Differentially expressed genes were identified and a GO term enrichment analysis was done to determine their roles.

Size: 2.89 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

jacobwindsor/tmerge Fork of guigolab/tmerge

Build highly accurate transcripts from long-read RNA data

Language: Python - Size: 1.17 MB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

d3b-center/d3b-dev-rnaseq-snv

RNAseq SNV Calling Workflow (beta). This workflow follows the COV-IRT NASA-developed pipeline, with the exception of joint genotyping-specific params and steps.

Language: Jupyter Notebook - Size: 204 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 2

egaffo/circompara-docker

:whale: Docker image for CirComPara

Language: Dockerfile - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 0