GitHub topics: tximport
complextissue/pytximport
Feature-rich Python implementation of the tximport package for gene count estimation.
Language: Python - Size: 108 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 36 - Forks: 2
jianhong/genomictools
docker file for genomic tools
Language: Dockerfile - Size: 176 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
SherineAwad/BulkRNASeq
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
Language: R - Size: 94.7 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
washingtoncandeia/tximport
Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.
Language: R - Size: 75.2 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
washingtoncandeia/kallisto_sleuth
Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2
Language: R - Size: 299 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
tdayris-perso/rna-dge-salmon-deseq2 📦
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
Language: Python - Size: 3.15 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 2
ishamada/RNA-seq-workflow-gene-level
RNA-seq workflow: gene-level exploratory analysis and differential expression.
Language: R - Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Language: Shell - Size: 418 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
