GitHub topics: ngs
stupornova33/MiSiPi.RNA
Characterization of small RNA pathways
Language: R - Size: 21.2 MB - Last synced at: about 2 hours ago - Pushed at: about 3 hours ago - Stars: 2 - Forks: 0
shishenyxx/PASM
Scripts for PASM, TAS/TASeq, and MPAS. We provided perl+R versions, python versions, and an extended snakemake version with all additional annotations. The scripts are useful for the calculation of variant allelic fractions for the validation and quantification of mosaic mutations.
Language: Python - Size: 2.84 MB - Last synced at: about 9 hours ago - Pushed at: about 11 hours ago - Stars: 3 - Forks: 0
Daylily-Informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Language: WDL - Size: 297 MB - Last synced at: about 22 hours ago - Pushed at: about 23 hours ago - Stars: 23 - Forks: 2
Joon-Klaps/viralgenie
Detect iSNV and construct whole viral genomes from metagenomic samples
Language: Nextflow - Size: 58.9 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 11 - Forks: 1
sortmerna/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
Language: C++ - Size: 88.9 MB - Last synced at: 2 days ago - Pushed at: 4 months ago - Stars: 259 - Forks: 68
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Language: Python - Size: 19.6 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 162 - Forks: 15
cihga39871/Atria
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
Language: Julia - Size: 2.01 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 35 - Forks: 3
galaxyproject/training-material
A collection of Galaxy-related training material
Language: HTML - Size: 23.3 GB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 330 - Forks: 950
xiaoli-dong/pathogenseq
Pathogen whole genome sequence (WGS) data analysis pipeline
Language: Nextflow - Size: 3.62 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 2 - Forks: 1
stjude-rust-labs/wdl
Rust crates for working with Workflow Description Language (WDL) documents.
Language: Rust - Size: 3.5 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 48 - Forks: 34
ugeneunipro/ugene
UGENE is free open-source cross-platform bioinformatics software
Language: C++ - Size: 206 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 231 - Forks: 64
samtools/htslib
C library for high-throughput sequencing data formats
Language: C - Size: 12.4 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 845 - Forks: 446
broadinstitute/gatk
Official code repository for GATK versions 4 and up
Language: Java - Size: 464 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1,793 - Forks: 604
galaxyproject/galaxy
Data intensive science for everyone.
Language: Python - Size: 651 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1,481 - Forks: 1,037
epam/cloud-pipeline
Cloud agnostic genomics analysis, scientific computation and storage platform
Language: Java - Size: 197 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 150 - Forks: 59
PavlidisLab/rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Language: Shell - Size: 43.5 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 24 - Forks: 5
pllittle/UNMASC
Tumor-only variant calling
Language: HTML - Size: 712 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 9 - Forks: 1
y9c/cutseq
✂️ Trim sequencing adapters from NGS data automatically
Language: Python - Size: 3.53 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 12 - Forks: 0
jodyphelan/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Language: Python - Size: 8.39 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 115 - Forks: 43
lindenb/jvarkit
Java utilities for Bioinformatics
Language: Java - Size: 59.6 MB - Last synced at: about 8 hours ago - Pushed at: about 9 hours ago - Stars: 497 - Forks: 133
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Language: Python - Size: 78.1 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 25 - Forks: 6
nf-core/oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
Language: Nextflow - Size: 5.58 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 66 - Forks: 17
meeranhussain/Population_genomic_analysis
A repository for efficient population genomic analysis using Snakemake workflow.
Language: R - Size: 916 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language: Java - Size: 164 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 285 - Forks: 244
YichaoOU/HemTools
HemTools: a collection of NGS pipelines and bioinformatic analyses
Language: Python - Size: 876 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 69 - Forks: 21
epigen/fetch_ngs
Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.
Language: Python - Size: 46.9 KB - Last synced at: 5 days ago - Pushed at: 17 days ago - Stars: 10 - Forks: 0
epigen/spilterlize_integrate
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.
Language: R - Size: 96.7 KB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 3
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Language: Python - Size: 786 MB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 3,365 - Forks: 742
epigen/atacseq_pipeline
Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
Language: Python - Size: 46.3 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 53 - Forks: 2
deepomicslab/SpecImmune
Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.
Language: F* - Size: 572 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 18 - Forks: 0
OpenGene/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Language: C++ - Size: 730 KB - Last synced at: 11 days ago - Pushed at: 5 months ago - Stars: 2,049 - Forks: 337
OpenGene/CfdnaPattern
Pattern Recognition for Cell-free DNA
Language: Python - Size: 1.15 MB - Last synced at: 10 days ago - Pushed at: over 6 years ago - Stars: 59 - Forks: 21
hms-dbmi/scde
R package for analyzing single-cell RNA-seq data
Language: R - Size: 14 MB - Last synced at: 12 days ago - Pushed at: about 1 year ago - Stars: 174 - Forks: 66
deeptools/deepTools
Tools to process and analyze deep sequencing data.
Language: Python - Size: 121 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 714 - Forks: 218
fulcrumgenomics/fgbio
Tools for working with genomic and high throughput sequencing data.
Language: Scala - Size: 9.44 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 325 - Forks: 71
wheretrue/exon
Exon is an OLAP query engine specifically for biology and life science applications.
Language: Rust - Size: 59.3 MB - Last synced at: 6 days ago - Pushed at: 25 days ago - Stars: 60 - Forks: 5
davidlougheed/strkit
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
Language: Python - Size: 5.01 MB - Last synced at: 2 days ago - Pushed at: 16 days ago - Stars: 10 - Forks: 0
maxplanck-ie/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
Language: Python - Size: 154 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 396 - Forks: 87
nf-core/sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
Language: Nextflow - Size: 2.97 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 4 - Forks: 15
bodeolukolu/GBSapp
Automated Pipeline for Variant/Haplotype Calling and Filtering
Language: Shell - Size: 2.96 GB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 7 - Forks: 1
epigen/rnaseq_pipeline
RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
Language: Python - Size: 60.5 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 2 - Forks: 0
khyox/recentrifuge
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Language: Python - Size: 13.9 MB - Last synced at: 16 days ago - Pushed at: about 1 month ago - Stars: 91 - Forks: 7
open2c/cooler
A cool place to store your Hi-C
Language: Python - Size: 88.1 MB - Last synced at: 8 days ago - Pushed at: 13 days ago - Stars: 215 - Forks: 56
laura-budurlean/PCA-Ethnicity-Determination-from-WGS-Data
A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.
Language: Shell - Size: 43 KB - Last synced at: 18 days ago - Pushed at: 5 months ago - Stars: 4 - Forks: 0
guillaume-gricourt/HmnFusion
A tool to aggregate results of fusion produced by Genefuse and Lumpy and calculate allelic frequency
Language: HTML - Size: 6.06 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0
aleponce4/hantavirus-pipeline
Bioinformatics pipeline for processing Hantavirus NGS data with a two-pass approach. Implements quality control, reference-based mapping, metaconsensus refinement, variant calling, and automatic negative sample detection. Features include primer evaluation, coverage visualization, and comparison between consensus sequences.
Language: Python - Size: 57.6 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
ncbi/rapt 📦
This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.
Size: 19.7 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 57 - Forks: 17
imperial-genomics-facility/data-management-python
Python library for running data analysis pipelines for IGF team
Language: Python - Size: 3.19 MB - Last synced at: 1 day ago - Pushed at: 13 days ago - Stars: 5 - Forks: 2
fgvieira/ngsF-HMM
Estimation of per-individual inbreeding tracts under a probabilistic framework
Language: C++ - Size: 303 KB - Last synced at: 19 days ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 6
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
Language: Cython - Size: 21.1 MB - Last synced at: 10 days ago - Pushed at: 26 days ago - Stars: 816 - Forks: 282
SemaphoreSolutions/s4-clarity-lib
A modern Python library for BaseSpace Clarity LIMS.
Language: Python - Size: 206 KB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 11
ngless-toolkit/ngless
NGLess: NGS with less work
Language: Haskell - Size: 14.1 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 146 - Forks: 25
amarinderthind/decontaminer
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x
Language: Perl - Size: 1.45 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 9 - Forks: 0
telatin/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
Language: Nim - Size: 78.2 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 114 - Forks: 9
stajichlab/PHYling
PHYling pipeline for species tree building from annotated genomes (see https://github.com/stajichlab/AAFTF and https://github.com/nextgenusfs/funannotate for assembly and annotation steps)
Language: Python - Size: 18.2 MB - Last synced at: 8 days ago - Pushed at: 10 days ago - Stars: 8 - Forks: 3
lpryszcz/bin 📦
My bioinfo toolbox
Language: Python - Size: 81.9 MB - Last synced at: 13 days ago - Pushed at: 2 months ago - Stars: 50 - Forks: 32
Nucleomics-VIB/ngs-tools
Various wrappers and parsers for NGS data analysis
Language: Shell - Size: 314 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 3 - Forks: 1
abdenlab/oxbow
Read specialized NGS formats as data frames in R, Python, and more.
Language: Rust - Size: 15.6 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 70 - Forks: 8
maurya-anand/nf-varcall
A Nextflow pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.
Language: Nextflow - Size: 64.5 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0
NagaComBio/TiNDA
Tumor in normal detection
Language: R - Size: 1.23 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 3 - Forks: 1
MultiQC/example-plugin
A miniature example of a MultiQC plugin.
Language: Python - Size: 43.9 KB - Last synced at: 12 days ago - Pushed at: 2 months ago - Stars: 9 - Forks: 6
nf-cmgg/smallvariants
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
Language: Nextflow - Size: 10.4 MB - Last synced at: 8 days ago - Pushed at: 12 days ago - Stars: 8 - Forks: 1
broadinstitute/catch
A package for designing compact and comprehensive capture probe sets.
Language: Python - Size: 5.68 MB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 83 - Forks: 16
mobidic/SEAL
SEAL db - Simple, Efficient And Lite database for NGS
Language: HTML - Size: 16.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 1
rcs333/VAPiD
VAPiD: Viral Annotation and Identification Pipeline
Language: Shell - Size: 18 MB - Last synced at: 29 days ago - Pushed at: 11 months ago - Stars: 52 - Forks: 15
iprada/Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Language: Python - Size: 3.75 MB - Last synced at: 8 days ago - Pushed at: 9 months ago - Stars: 62 - Forks: 19
Sydney-Informatics-Hub/Bioinformatics
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
Size: 173 KB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 17 - Forks: 1
cbg-ethz/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Language: Jupyter Notebook - Size: 17.4 MB - Last synced at: 16 days ago - Pushed at: about 1 month ago - Stars: 135 - Forks: 47
OpenGene/MutScan
Detect and visualize target mutations by scanning FastQ files directly
Language: C - Size: 914 KB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 151 - Forks: 39
cbg-ethz/cowwid
Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.
Language: Jupyter Notebook - Size: 279 KB - Last synced at: 21 days ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 0
aleimba/bac-genomics-scripts
Collection of scripts for bacterial genomics
Language: Perl - Size: 2.96 MB - Last synced at: 18 days ago - Pushed at: over 5 years ago - Stars: 45 - Forks: 35
zavolanlab/htsinfer
Infer metadata for your downstream analysis straight from your RNA-Seq data
Language: Python - Size: 8.32 MB - Last synced at: 28 days ago - Pushed at: 5 months ago - Stars: 14 - Forks: 22
baku4/sigalign
A Similarity-Guided Alignment Algorithm
Language: Rust - Size: 11.7 MB - Last synced at: 24 days ago - Pushed at: about 1 month ago - Stars: 26 - Forks: 4
imjiaoyuan/papers-rep
Collection of bioinformatics analysis code and replication records for academic papers
Language: R - Size: 21.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 8
masikol/cager-misc
Miscellaneous bioinformatic tools from the Center of Analytical and Genetic Engineering Research
Language: Python - Size: 124 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
lgmgeo/AnnotSV
Annotation and Ranking of Structural Variation
Language: Tcl - Size: 87.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 240 - Forks: 35
sequana/sequana
Sequana: a set of Snakemake NGS pipelines
Language: Jupyter Notebook - Size: 35.8 MB - Last synced at: 6 days ago - Pushed at: about 2 months ago - Stars: 146 - Forks: 27
ShujiaHuang/basevar
This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
Language: C - Size: 46.2 MB - Last synced at: 8 days ago - Pushed at: about 2 months ago - Stars: 27 - Forks: 7
OpenGene/gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Language: C++ - Size: 262 KB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 119 - Forks: 31
YU-Zhejian/art_modern
A modernized ART for Illumina read simulation.
Language: C++ - Size: 6.79 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 4 - Forks: 0
oschwengers/asap
A scalable bacterial genome assembly, annotation and analysis pipeline
Language: Groovy - Size: 13.6 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 73 - Forks: 19
cokelaer/damona
singularity environment manager (application to NGS and bioinformatics)
Language: Python - Size: 6.91 MB - Last synced at: 6 days ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 2
disq-bio/disq
A library for manipulating bioinformatics sequencing formats in Apache Spark
Language: Java - Size: 44 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 32 - Forks: 11
BU-ISCIII/iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Language: Python - Size: 22.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 73 - Forks: 36
bioconvert/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Language: Python - Size: 19.9 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 377 - Forks: 44
bpucker/MGSE
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Language: Python - Size: 16.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 33 - Forks: 3
UPHL-BioNGS/Grandeur
UPHL's Reference Free Pipeline
Language: Nextflow - Size: 512 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 26 - Forks: 7
Sydney-Informatics-Hub/Fastq-to-BAM 📦
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
Language: Shell - Size: 253 KB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 20 - Forks: 8
OpenGene/fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Language: C++ - Size: 1.02 MB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 116 - Forks: 25
ginolhac/mapDamage
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
Language: Python - Size: 1.35 MB - Last synced at: 7 days ago - Pushed at: 8 months ago - Stars: 44 - Forks: 12
Integrative-Transcriptomics/DamageProfiler
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
Language: Java - Size: 29.8 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 18 - Forks: 4
ishinder/EASTR
Emending Alignment of Spliced Transcript Reads
Language: Python - Size: 334 KB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 1
nsbuitrago/vfind
Simple variant finding from NGS data
Language: Rust - Size: 171 KB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 2
seppinho/haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
Language: Java - Size: 30.4 MB - Last synced at: 8 days ago - Pushed at: about 2 years ago - Stars: 75 - Forks: 23
fmalmeida/ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Language: Nextflow - Size: 5.27 MB - Last synced at: 9 days ago - Pushed at: 10 months ago - Stars: 32 - Forks: 5
scbirlab/monte-barcode
🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.
Language: Python - Size: 54.7 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis
This RNAseq data analysis tutorial is created for educational purpose
Language: R - Size: 2.57 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 30 - Forks: 13
mattgalbraith/BaSH_seq
This pipeline processes high-throughput sequencing data (PE/SE) through QC,trim/filter,alignment,counting etc via sequential stages, with individual samples run in parallel via submission to a Slurm queue.
Language: Shell - Size: 154 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
NBISweden/workshop-RNAseq
Workshop • Analysis of RNA-seq data
Language: CSS - Size: 685 MB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 35 - Forks: 15
OpenGene/OpenGene.jl
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Language: Julia - Size: 177 KB - Last synced at: 10 days ago - Pushed at: almost 3 years ago - Stars: 65 - Forks: 15