Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: exome
lucianhu/Masterarbeit
Leveraging WES short reads for PAN-EXOME creation and analysis.
Language: WDL - Size: 18.6 MB - Last synced: 9 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
brentp/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Language: Nim - Size: 1.18 MB - Last synced: 14 days ago - Pushed: about 1 month ago - Stars: 657 - Forks: 100
YogiOnBioinformatics/Tumor-Exome-Mutation-Analysis
Statistical analysis on Mutation Annotation Format files from Whole-Exome Sequencing of Tumor samples and Controls.
Language: Jupyter Notebook - Size: 2.62 MB - Last synced: 21 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 2
Marcisbee/exome
π State manager for deeply nested states
Language: TypeScript - Size: 3.36 MB - Last synced: 25 days ago - Pushed: 2 months ago - Stars: 138 - Forks: 4
exomiser/Exomiser
A Tool to Annotate and Prioritize Exome Variants
Language: Java - Size: 279 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 180 - Forks: 54
bioinf/RMAhunter
Language: HTML - Size: 116 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 7 - Forks: 0
rockbio/rockbio Fork of raonyguimaraes/mendelmd
Cloud based analysis for Doctors, Researchers, Bioinformaticians and Developers.
Language: HTML - Size: 39.9 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
nf-core/exoseq π¦
Please consider using/contributing to https://github.com/nf-core/sarek
Language: Nextflow - Size: 2.77 MB - Last synced: 5 months ago - Pushed: over 5 years ago - Stars: 14 - Forks: 25
genomics-geek/exome_slicer
Exome Slicer - Application to evaluate sequencing quality when designing an Exome Slice (NGS virtual panel)
Language: Python - Size: 20.5 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0
RRafiee/XHMM
eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data
Language: Shell - Size: 13 MB - Last synced: 7 months ago - Pushed: about 7 years ago - Stars: 5 - Forks: 3
patidarr/ngs_pipeline
Exome/Capture/RNASeq Pipeline Implementation using snakemake
Language: Python - Size: 46.6 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 43 - Forks: 19
berntpopp/morbidgenes
Monthly updated list of diagnostically relevant genes
Language: R - Size: 169 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 0
jlanga/exfi_validation
Snakemake pipeline to validate exfi's performance
Language: Python - Size: 8.97 MB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1
christacaggiano/exome_processing_pipeline
simple pipeline for processing exome sequencing data using BWA and GATK4
Language: Shell - Size: 9.77 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0
LordGenome/phigis
PCR primer design
Language: Perl - Size: 18.6 KB - Last synced: 10 months ago - Pushed: over 7 years ago - Stars: 4 - Forks: 1
lkuchenb/MultiHLA
WES HLA Typing based on multiple alternative tools
Language: Python - Size: 110 KB - Last synced: 5 months ago - Pushed: about 3 years ago - Stars: 12 - Forks: 2
blakngu/humanwes
Human Whole Exome Sequencing
Language: HTML - Size: 13.8 MB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
Nealelab/WES_QC_Hail
Language: Python - Size: 260 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0
renatopuga/exoma-de-rato
Variantes genΓ©ticas de amostras de Rattus norvegicus utilizando GATK4
Language: HTML - Size: 4.02 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
NYU-Molecular-Pathology/NGS580-nf
Target exome sequencing analysis for NYU NGS580 gene panel
Language: Nextflow - Size: 1.59 MB - Last synced: 11 months ago - Pushed: over 2 years ago - Stars: 8 - Forks: 6
Grelot/diabetesGenetics--COAT
COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.
Language: Python - Size: 171 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
snewhouse/exomiser-clone
Size: 8.79 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
tycheleturner/exome_class
Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.
Language: R - Size: 7.62 MB - Last synced: 12 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1