lpantano/DEGreport

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Language: R - Size: 51.7 MB - Last synced: 2 days ago - Pushed: 3 months ago - Stars: 22 - Forks: 16

EichlerLab/aws

This is the github repository for the Eichler lab Amazon Web Services (AWS) pipelines

Language: Perl - Size: 1.39 MB - Last synced: 4 days ago - Pushed: over 7 years ago - Stars: 2 - Forks: 0

OpenGene/fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Language: C++ - Size: 728 KB - Last synced: 7 days ago - Pushed: about 1 month ago - Stars: 1,779 - Forks: 330

stewdio/q.js

Quantum computing in your browser.

Language: JavaScript - Size: 7.99 MB - Last synced: 10 days ago - Pushed: about 1 year ago - Stars: 330 - Forks: 30

shymega/booters-loader

This is a new bootloader that can be built for a wide variety of targets, and is based around a framework-oriented API. Highly experimental, here be dragons!

Language: Rust - Size: 112 KB - Last synced: 15 days ago - Pushed: about 2 months ago - Stars: 6 - Forks: 1

atgu/GWASpy

GWAS QC, PCA, haplotype phasing, genotype imputation

Language: Python - Size: 6.1 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 15 - Forks: 4

neozhu/wmsiqc

This is a warehouse quality inspection management system that helps businesses streamline their inbound and outbound quality inspection processes. The system is designed to be user-friendly and efficient, and it can be used to manage a wide variety of products and inspection criteria.

Language: JavaScript - Size: 38.7 MB - Last synced: 18 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

raamana/visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Language: Python - Size: 104 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 72 - Forks: 13

nf-core/nanoseq

Nanopore demultiplexing, QC and alignment pipeline

Language: Nextflow - Size: 6.71 MB - Last synced: 2 days ago - Pushed: 7 days ago - Stars: 144 - Forks: 72

tnaake/MatrixQCvis

Language: R - Size: 4.47 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 5 - Forks: 1

instance01/qubo-nn

Classifying, auto-encoding and reverse-engineering QUBO matrices

Language: Python - Size: 127 MB - Last synced: 3 days ago - Pushed: over 2 years ago - Stars: 41 - Forks: 12

SDFIdk/DHMQC

Processing suite for the Danish Digital Elevation Model

Language: Python - Size: 22.4 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 6 - Forks: 3

ExploreASL/ExploreASL

ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at [email protected]. Development details can be found under the wiki tab. Code documentation can be found on the documentation website https://exploreasl.github.io/Documentation

Language: MATLAB - Size: 418 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 43 - Forks: 11

OpenImaging/miqa-phase1

A web application for medical imaging quality assurance

Language: Python - Size: 20.5 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 20 - Forks: 8

oicr-gsi/sample-fingerprinting

workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow

Language: wdl - Size: 1.18 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 2

oicr-gsi/hsMetrics

Workflow to run HSMetrics

Language: WDL - Size: 78.1 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

oicr-gsi/ercc

workflow for analysis of samples with RNA spike-ins (ERCC)

Language: wdl - Size: 87.9 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

oicr-gsi/fastqc

Workflow for FastQC

Language: wdl - Size: 2.11 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

oicr-gsi/xenoclassify-workflow

workflow to classify short-read sequencing data generated from xenograft samples

Language: WDL - Size: 103 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

MoTrPAC/MotrpacBicQC

R package for the MoTrPAC community

Language: R - Size: 3.6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 8 - Forks: 4

OpenGene/AfterQC

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Language: Python - Size: 1.31 MB - Last synced: 7 days ago - Pushed: about 4 years ago - Stars: 201 - Forks: 50

seqeralabs/nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

Language: HTML - Size: 1.58 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 5 - Forks: 7

tnaake/MsQuality

Language: R - Size: 19.2 MB - Last synced: 24 days ago - Pushed: 3 months ago - Stars: 7 - Forks: 0

leppott/ContDataQC

Quality control checks on continuous data. Example data is from a HOBO data logger with 30 minute intervals.

Language: HTML - Size: 94.3 MB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 18 - Forks: 10

Feromon32/JiggleBones-QC-Creater

Writes all the jiggle bones in the blender 3.0+ *for source engine*

Language: Python - Size: 8.79 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 4 - Forks: 0

OrangePomeranian/Quantitative_Genetics

Language: R - Size: 779 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

sterafix/autoHOM

Autmomates the process of recording HOM dips with a Newport CONEX linear stage, a qutools quTAU and an Arroyo Instruments TECSource 5305. Developed at the Quantum Photonics group of the LLT at RWTH Aachen University.

Language: Jupyter Notebook - Size: 68.4 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

ay-lab/ATACProc

ATAC-seq processing pipeline

Language: Shell - Size: 138 KB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 27 - Forks: 13

choishingwan/GreedyRelated 📦

Script for greedily remove related samples

Language: C++ - Size: 2.88 MB - Last synced: 5 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

tnaake/MsQualityUtils

Language: R - Size: 1.63 MB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

nbroguiere/burgertools

Bundle of Useful scRNA-seq Gating Tools Extending seuRat

Language: R - Size: 43.9 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

traejbdev/QCSystems

QCSystems is a PHP Content Management System targeting Quality Assurance in the Horticulture Industry. This tool provides a local solution to pack sheds, farms & processing facilities looking to advance their QC capabilities

Size: 14.6 KB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

MareesAT/GWA_tutorial

A comprehensive tutorial about GWAS and PRS

Size: 31 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 695 - Forks: 301

Grelot/clean-fastq

A workflow designed to clean fastq files for the SEACONNECT project

Language: Python - Size: 31.3 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 2

vonMeyennLab/nf_qc

A Nextflow pipeline to perform quality control of sequencing data.

Language: Nextflow - Size: 57.6 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

ritu-thombre99/qiskit-certified-exam-notes

These are the notes I created while I was studying for the Qiskit Associate Developer exam. I hope these will be helpful for others.

Size: 3.65 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 5

vfonov/DARQ

Deep learning of quality control for stereotaxic registration of human brain MRI

Language: Python - Size: 5.63 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 0

oicr-gsi/bamQC

Workflow to run bam-qc-metrics (https://github.com/oicr-gsi/bam-qc-metrics)

Language: WDL - Size: 813 KB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 1 - Forks: 2

wenzeslaus/code-quality-measures-foss4g-2022

Take-Home Messages from Adding Code Quality Measures to GRASS GIS

Language: JavaScript - Size: 26.2 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

mcjmigdal/sumsamstats

summarising outputs of samtools stats with ATAC-seq qc in mind

Language: R - Size: 200 KB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

devsujay19/Quicky-Chat 📦

Quicky-Chat - A Chat Generative Pretrained Transformer with Predefined Questions and Answers Dictionary.

Language: JavaScript - Size: 406 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

nilesh-tawari/ChronQC

Manuscript describing ChronQC is now available online in Bioinformatics

Language: HTML - Size: 39.3 MB - Last synced: 15 days ago - Pushed: almost 5 years ago - Stars: 17 - Forks: 8

euroargodev/check_CTD-RDB

Checking the status of the CTD Reference database (RDB)

Language: MATLAB - Size: 52.7 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1

NCBI-Hackathons/ScrubSV

A QC pipeline for SVs calls based on coverage and SNP calls

Language: R - Size: 189 KB - Last synced: 30 days ago - Pushed: over 5 years ago - Stars: 5 - Forks: 0

mattgalbraith/fastqscreen-docker-singularity

Build Docker container for FastQ Screen software and (optionally) convert to Apptainer/Singularity.

Language: Dockerfile - Size: 9.77 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

mattgalbraith/multiqc-docker-singularity

Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.

Language: Dockerfile - Size: 1.95 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

mattgalbraith/rseqc-docker-singularity

Build Docker container for RseQC and (optionally) convert to Apptainer/Singularity.

Language: Dockerfile - Size: 8.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

SoCXin/CS32G020

L2 R3：chipsea Cortex M0 PD MCU (CS32G020/CS32G021)

Language: C - Size: 12.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1

cesarecaoduro/DiRoots

DiRoots - Connecting the dots!

Language: C# - Size: 38.1 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 7 - Forks: 1

ay-lab/ChIPLine

ChIP-seq analysis pipeline

Language: Shell - Size: 66.4 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 7 - Forks: 4

sidchop/carpetplotR

Fast and easy visualization of fMRI data quality using carpet plots.

Language: R - Size: 14.5 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 6 - Forks: 2

myusufcse/alm-rest-client

ALM REST API Integration in ruby.

Size: 7.81 KB - Last synced: 11 months ago - Pushed: about 5 years ago - Stars: 3 - Forks: 0

Nealelab/WES_QC_Hail

Language: Python - Size: 260 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

brandenc40/qcmobile

FMCSA QC Mobile API Client

Language: Go - Size: 66.4 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0

Paril/quake2c-progs

Quake II QC progs.dat

Language: C - Size: 1.55 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 8 - Forks: 2

0CBH0/ATACFragQC

QC for ATAC-seq fragments

Language: Python - Size: 225 KB - Last synced: 6 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 1

JetBrains-Research/washu

Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing

Language: Shell - Size: 159 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

nammoooo/Software-Testing-Concept-Process

QA, QC and Testing process - concepts - types

Size: 6.84 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

ryandkuster/ngsComposer

Base-call error-filtering and read preprocessing pipeline for fastq libraries

Language: Python - Size: 5.39 MB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 3 - Forks: 1

sliorde/quantum-clustering-masters-thesis

Implementation of qunatum clustering and hierarchical quantum clustering

Language: Matlab - Size: 2.81 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 3 - Forks: 1

cometsong/mbiome_seqrun_qc

List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.

Language: Python - Size: 2.97 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

SacredData/baptism

sacred.audio stage 1: analysis & reporting

Language: JavaScript - Size: 1.81 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 3 - Forks: 1

cmungall/dasher

Base framework for creating semantic QC dashboards

Language: Python - Size: 104 KB - Last synced: 8 days ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

DCAN-Labs/SwipesForScienceToolkit

Tool kit for exploratory data analysis and usage of SwipesForScience JSON data, complete with anonymous sample data.

Language: Jupyter Notebook - Size: 15.8 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

csawye01/nanoseq Fork of nf-core/nanoseq

See the main fork of this repository here >>> https://github.com/nf-core/nanoseq

Language: Nextflow - Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

metamaden/methyPre

Methylation array preprocessing.

Language: R - Size: 1.12 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 5 - Forks: 1

GailGolomb1/Database

New repo

Language: Jupyter Notebook - Size: 148 KB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

amelgh/DNASeq-VariantCalling

Language: Shell - Size: 785 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 2

metamaden/InfiniumPurifyR

Estimate tumor enrichment from methylation array data.

Language: R - Size: 981 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1

tycheleturner/exome_class

Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.

Language: R - Size: 7.62 MB - Last synced: 11 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1

tycheleturner/genome_class

Codes for genome sequencing class being taught by Tychele N. Turner, Ph.D.

Language: R - Size: 20.5 KB - Last synced: 11 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

markiewb/slides-netbeans-netcat-and-qc

Slides for a presenation about "NetBeans NetCat and QC - Insides to community-based testing"

Language: JavaScript - Size: 2.15 MB - Last synced: about 1 month ago - Pushed: over 10 years ago - Stars: 0 - Forks: 0