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GitHub / lpantano / DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lpantano%2FDEGreport
Stars: 22
Forks: 16
Open Issues: 33
License: mit
Language: R
Repo Size: 51.7 MB
Dependencies:
42
Created: about 10 years ago
Updated: 18 days ago
Last pushed: 3 months ago
Last synced: 18 days ago
Commit Stats
Commits: 535
Authors: 22
Mean commits per author: 24.32
Development Distribution Score: 0.279
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/lpantano/DEGreport
Topics: bioconductor, differential-expression, qc, r, report, rna-seq, smallrna
Files
Dependencies
- R >= 4.0.0 depends
- Biobase * imports
- BiocGenerics * imports
- ComplexHeatmap * imports
- ConsensusClusterPlus * imports
- DESeq2 * imports
- RColorBrewer * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- broom * imports
- circlize * imports
- cluster * imports
- cowplot * imports
- dplyr * imports
- edgeR * imports
- ggdendro * imports
- ggplot2 * imports
- ggrepel * imports
- grDevices * imports
- grid * imports
- knitr * imports
- lasso2 * imports
- logging * imports
- magrittr * imports
- methods * imports
- psych * imports
- reshape * imports
- rlang * imports
- scales * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- utils * imports
- AnnotationDbi * suggests
- BiocStyle * suggests
- limma * suggests
- pheatmap * suggests
- rmarkdown * suggests
- statmod * suggests
- testthat * suggests
- python latest build