nf-core 151 nextflow 139 workflow 108 pipeline 107 bioinformatics 16 rna 10 metagenomics 10 nanopore 9 rna-seq 9 variant-calling 9 proteomics 8 single-cell 8 genome-assembly 6 genomics 6 assembly 6 10xgenomics 5 pipelines 5 reproducible-research 4 atac-seq 4 taxonomic-profiling 4 image-processing 4 workflows 4 nextflow-pipelines 4 microbiome 4 openms 4 transcriptomics 4 mass-spectrometry 4 illumina 4 virus 3 proteogenomics 3 nanopore-sequencing 3 denovo-assembly 3 quantification 3 annotation 3 ngs 3 dna 3 automation 3 demultiplexing 3 long-read-sequencing 3 hpc 3 10x-genomics 3 differential-expression 3 taxonomic-classification 3 spatial 3 github-actions 3 transcriptome 2 mnase-seq 2 nucleosome 2 metabarcoding 2 nucleosome-maps 2 bacterial-genomes 2 nucleosome-positioning 2 denovo 2 star-solo 2 bioinformatics-pipeline 2 hybrid-assembly 2 fastq 2 tower 2 chip-seq 2 bacteria 2 peak-calling 2 nextflow-workflow 2 linting 2 chromatin-accessibiity 2 cosmic 2 shotgun 2 structural-variants 2 rnaseq 2 profiling 2 phylogenetics 2 clip 2 long-reads 2 launch 2 nextflow-tower 2 edna 2 image-analysis 2 adna 2 gatk4 2 microscopy 2 configuration 2 isoseq 2 isoseq-3 2 tama 2 docker 2 ultra 2 rna-seq-analysis 2 segmentation 2 circrna 2 fastqc 2 dsl2 2 dna-methylation 2 bcl2fastq 2 viral 2 crispr 2 crispr-analysis 2 qc 2 alignment 2 conda 2 bustools 1 sbml-model 1