GitHub topics: nf-core
nf-core/viralmetagenome
Detect iSNV and construct whole viral genomes from metagenomic samples
Language: Nextflow - Size: 62.4 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 19 - Forks: 3
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language: Nextflow - Size: 161 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 364 - Forks: 883
nf-core/proteinannotator
The best protein annotation pipeline in the world. Protein fasta → ??? → Annotations
Language: Nextflow - Size: 11.4 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 5 - Forks: 8
nf-core/website
Code and files for the main nf-core website.
Language: MDX - Size: 3.77 GB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 75 - Forks: 245
nf-core/rnafusion
RNA-seq analysis pipeline for detection of gene-fusions
Language: Nextflow - Size: 22.6 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 160 - Forks: 113
nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language: Nextflow - Size: 72.1 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1,070 - Forks: 784
nf-core/detaxizer
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
Language: Nextflow - Size: 6.52 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 20 - Forks: 7
nf-core/configs
Config files used to define parameters specific to compute environments at different Institutions
Language: Nextflow - Size: 47.3 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 102 - Forks: 317
nf-core/airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
Language: Nextflow - Size: 13.7 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 65 - Forks: 45
nf-core/genomeqc
Compare the quality of multiple genomes, along with their annotations.
Language: Nextflow - Size: 2.62 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 14 - Forks: 16
nf-core/drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Language: Nextflow - Size: 853 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 5 - Forks: 2
nf-core/tfactivity
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
Language: Nextflow - Size: 7.73 MB - Last synced at: about 12 hours ago - Pushed at: about 17 hours ago - Stars: 12 - Forks: 5
nf-core/mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
Language: Nextflow - Size: 2.99 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 19 - Forks: 20
nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language: Nextflow - Size: 104 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 458 - Forks: 456
nf-core/metatdenovo
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Language: Nextflow - Size: 103 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 32 - Forks: 17
nf-core/tools
Python package with helper tools for the nf-core community.
Language: Python - Size: 17.5 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 262 - Forks: 206
nf-core/sopa
Nextflow version of Sopa - spatial omics pipeline and analysis
Language: Nextflow - Size: 437 KB - Last synced at: 10 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 1
nf-core/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Language: Nextflow - Size: 16.1 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 156 - Forks: 53
nf-core/oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
Language: Nextflow - Size: 6.35 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 77 - Forks: 21
elchechu1101/qc
Explore reinforcement learning with action chunking in this repository. Access datasets and installation instructions to enhance your projects. 🌟📦
Language: Python - Size: 1.19 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 2 - Forks: 0
andritefy/Configs
Dotfiles of Silvaire's Arch Linux
Language: JavaScript - Size: 743 KB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 1 - Forks: 0
nf-core/scrnaseq
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
Language: Nextflow - Size: 43.6 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 281 - Forks: 193
mskcc-omics-workflows/modules
A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
Language: Python - Size: 2.75 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 11 - Forks: 6
nf-core/pairgenomealign
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Language: Nextflow - Size: 2.84 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 9 - Forks: 5
nf-core/createpanelrefs
Generate Panel of Normals, models or other similar references from lots of samples
Language: Nextflow - Size: 2.95 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 10 - Forks: 10
nf-core/epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
Language: Nextflow - Size: 4.93 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 46 - Forks: 26
nf-core/bamtofastq
Converts bam or cram files to fastq format and does quality control.
Language: Nextflow - Size: 156 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 27 - Forks: 18
nf-core/variantbenchmarking
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
Language: Nextflow - Size: 20.2 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 31 - Forks: 15
rki-mf1/omnifluss
Computational workflow for virus genome reconstruction
Language: Nextflow - Size: 1.52 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 6 - Forks: 0
nf-core/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Language: Nextflow - Size: 64 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 172 - Forks: 84
nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
Size: 30 GB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 131 - Forks: 421
nf-core/crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Language: Nextflow - Size: 18.8 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 47 - Forks: 31
nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
Language: Nextflow - Size: 16 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 216 - Forks: 156
nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Language: Nextflow - Size: 9.92 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 138 - Forks: 133
nf-core/funcscan
(Meta-)genome screening for functional and natural product gene sequences
Language: Nextflow - Size: 25.7 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 89 - Forks: 27
nf-core/pathogensurveillance
Surveillance of pathogens using population genomics and sequencing
Language: Nextflow - Size: 283 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 36 - Forks: 7
nf-core/seqinspector
QC pipeline to inspect your sequences
Language: Nextflow - Size: 921 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 14 - Forks: 32
nf-core/circrna
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Language: Nextflow - Size: 90.4 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 57 - Forks: 32
nf-core/nascent
Nascent Transcription Processing Pipeline
Language: Nextflow - Size: 8.8 MB - Last synced at: 13 days ago - Pushed at: 14 days ago - Stars: 19 - Forks: 11
nf-core/spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Language: Nextflow - Size: 7.09 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 65 - Forks: 25
nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Language: Nextflow - Size: 24.2 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 168 - Forks: 157
Adelia567/Crispr
Crispr is a web app that simplifies the design and analysis of CRISPR guide RNAs, making it accessible for everyone. 🧬 With features like off-target scanning and AI reporting, users can quickly generate and evaluate their gRNA options. 🐙
Language: Python - Size: 158 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0
nf-core/rarevariantburden
Pipeline for performing consistent summary count based rare variant burden test, which is useful when we only have sequenced cases data. For example, we can compare the cases against public summary count data, such as gnomAD.
Language: Nextflow - Size: 1.83 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 1
nf-core/scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Language: Nextflow - Size: 3.32 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 69 - Forks: 36
nf-core/raredisease
Call and score variants from WGS/WES of rare disease patients.
Language: Nextflow - Size: 187 MB - Last synced at: 19 days ago - Pushed at: 20 days ago - Stars: 103 - Forks: 46
nf-core/pangenome
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
Language: Nextflow - Size: 4.28 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 91 - Forks: 20
nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Language: Nextflow - Size: 17.5 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 209 - Forks: 138
nf-core/scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Language: Nextflow - Size: 41.4 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 40 - Forks: 14
nf-core/demo
nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
Language: Nextflow - Size: 681 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 6 - Forks: 12
nf-core/pixelator
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Language: Nextflow - Size: 4.9 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 10 - Forks: 6
nf-core/lsmquant
A pipeline for processing and analysis of light-sheet microscopy images.
Language: Nextflow - Size: 1.26 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 2 - Forks: 1
nf-core/createtaxdb
Parallelised and automated construction of metagenomic classifier databases of different tools
Language: Nextflow - Size: 4.73 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 13 - Forks: 9
nf-core/methylong
Extract methylation calls from long reads (ONT/ PacBio)
Language: Nextflow - Size: 143 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 13 - Forks: 2
mahesh-panchal/Nextflow_sandbox
A playground to explore how to implement things in Nextflow and nf-core
Language: Dockerfile - Size: 259 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 4
nf-core/deepmodeloptim
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
Language: Nextflow - Size: 4.22 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 29 - Forks: 15
seqeralabs/action-tower-launch
GitHub Action to launch a workflow using Seqera Platform
Language: Shell - Size: 897 KB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1
nf-core/rnavar
gatk4 RNA variant calling pipeline
Language: Nextflow - Size: 4.17 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 48 - Forks: 39
nf-core/diseasemodulediscovery
A pipeline for network-based disease module identification.
Language: Python - Size: 13.4 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 5 - Forks: 3
nf-core/proteinfold
Protein 3D structure prediction pipeline
Language: Nextflow - Size: 7.78 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 82 - Forks: 58
nf-core/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
Language: Nextflow - Size: 4.42 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 177 - Forks: 81
nf-core/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
Language: Nextflow - Size: 6.92 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 203 - Forks: 98
nf-core/bacass
Simple bacterial assembly and annotation pipeline
Language: Nextflow - Size: 5.23 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 75 - Forks: 60
nf-core/differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Language: Nextflow - Size: 9.85 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 79 - Forks: 51
nf-core/proteinfamilies
Generation and update of protein families
Language: Nextflow - Size: 2.52 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 14 - Forks: 3
nf-core/mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Language: Nextflow - Size: 26 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 36 - Forks: 29
scilus/nf-mouse_flow
Diffusion MRI Pipeline for Mouse
Language: Nextflow - Size: 298 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 1
nf-core/coproid
Coprolite host Identification pipeline
Language: Nextflow - Size: 112 MB - Last synced at: 9 days ago - Pushed at: 19 days ago - Stars: 12 - Forks: 5
CDCgov/MIRA-NF
Language: Nextflow - Size: 12.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 6
nf-core/sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
Language: Nextflow - Size: 4.39 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 4 - Forks: 15
U-BDS/scnanoseq_analysis
Language: R - Size: 800 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
nf-core/mag
Assembly and binning of metagenomes
Language: Nextflow - Size: 37 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 239 - Forks: 132
nf-core/genomeassembler
Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads
Language: Nextflow - Size: 4.7 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 26 - Forks: 18
NIGMS/DNA-Methylation-Sequencing-Analysis-with-WGBS
In this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl-seq pipeline in Nextflow
Language: Jupyter Notebook - Size: 13.2 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 4
nf-core/logos
Host nf-core logos and templates for making new logos
Size: 47.4 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 6 - Forks: 13
sanger-tol/nf-core-tools-fim-2024 Fork of nf-core/tools 📦
Archived fork of the nf-core tools repository, used to add support for cross-organisation sub-workflows during the 2024 edition of the Future Innovators Mentorships.
Language: Python - Size: 16.7 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1
nf-core/marsseq
MARS-seq v2 pre-processing pipeline with velocity
Language: Nextflow - Size: 3.38 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 5
nf-core/callingcards
A pipeline for processing calling cards data
Language: Nextflow - Size: 38.6 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 5 - Forks: 4
nf-core/multiplesequencealign
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
Language: Nextflow - Size: 19.6 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 35 - Forks: 14
nf-core/ribomsqc
QC pipeline that monitors mass spectrometer performance in ribonucleoside analysis
Language: Nextflow - Size: 326 KB - Last synced at: 13 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 2
nf-core/tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
Language: Nextflow - Size: 2.51 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 17 - Forks: 5
nf-core/evexplorer
nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)
Language: Nextflow - Size: 980 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 1 - Forks: 2
nf-core/denovotranscript
A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
Language: Nextflow - Size: 1.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 17 - Forks: 4
nf-core/smrnaseq
A small-RNA sequencing analysis pipeline
Language: Nextflow - Size: 8.48 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 85 - Forks: 126
nf-core/hlatyping
Precision HLA typing from next-generation sequencing data
Language: Nextflow - Size: 39.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 67 - Forks: 32
Sydney-Informatics-Hub/HPC_usage_reports
Scripts to pull resource usage data from job logs for Artemis and Gadi into tab-delimited format and to report queue time from job history
Language: Perl - Size: 27.3 KB - Last synced at: 23 days ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 0
nf-core/stableexpression
Pipeline dedicated to finding the most stable genes among a single or multiple expression dataset(s). It is useful in particular for finding the most suitable RT-qPCR reference genes for a specific species.
Language: Nextflow - Size: 10.7 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 4 - Forks: 1
nf-core/gwas
UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
Language: Nextflow - Size: 2.92 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 25 - Forks: 23
nf-core/reportho
nf-core pipeline for comparative analysis of ortholog predictions
Language: Nextflow - Size: 2.83 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 11 - Forks: 6
nf-core/fastqrepair
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
Language: Nextflow - Size: 3.01 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 3
nf-core/drugresponseeval
Pipeline for testing drug response prediction models in a statistically and biologically sound way.
Language: Nextflow - Size: 7.62 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 20 - Forks: 4
JasonHunter95/localNF-Core
This repo is designed to run an nf-core RNASeq pipeline locally using Docker.
Language: Nextflow - Size: 6.84 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
nf-core/tbanalyzer
An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.
Language: Nextflow - Size: 5.14 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 10 - Forks: 3
nf-core/proteomicslfq
Proteomics label-free quantification (LFQ) analysis pipeline
Language: Nextflow - Size: 3.59 MB - Last synced at: 2 months ago - Pushed at: 6 months ago - Stars: 36 - Forks: 21
nf-core/demultiplex
Demultiplexing pipeline for sequencing data
Language: Nextflow - Size: 13.7 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 47 - Forks: 44
nf-core/abotyper
A pipeline for characterising the Human Blood Group and Red Cell Antigens using Oxford Nanopore third-generation sequencing data.
Language: Nextflow - Size: 1.42 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1
Midnighter/nextflow-gotchas
A collection of unexpected challenges and learnings with nextflow and nf-core.
Language: Shell - Size: 707 KB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 37 - Forks: 9
nf-core/readsimulator
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
Language: Nextflow - Size: 7.64 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 31 - Forks: 8
nf-core/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language: Nextflow - Size: 73.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 55 - Forks: 51
muneebdev7/metabolt
MetaBolt: Lightning fast & automated metagenomic pipeline powered by Nextflow
Language: Nextflow - Size: 2.12 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 0
nf-core/isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
Language: Nextflow - Size: 5.78 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 40 - Forks: 18