GitHub topics: nf-core
nf-core/methylong
Extract methylation calls from long reads (ONT/ PacBio)
Language: Nextflow - Size: 77.3 MB - Last synced at: about 4 hours ago - Pushed at: about 5 hours ago - Stars: 8 - Forks: 2
nf-core/tools
Python package with helper tools for the nf-core community.
Language: Python - Size: 17.2 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 257 - Forks: 202
nf-core/gwas
UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
Language: Nextflow - Size: 2.92 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 25 - Forks: 23
nf-core/evexplorer
nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)
Language: Nextflow - Size: 601 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1 - Forks: 1
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language: Nextflow - Size: 160 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 355 - Forks: 846
nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language: Nextflow - Size: 102 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 442 - Forks: 443
JasonHunter95/localNF-Core
This repo is designed to run an nf-core RNASeq pipeline locally using Docker.
Language: Nextflow - Size: 6.84 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0
nf-core/proteinfamilies
Generation and update of protein families
Language: Nextflow - Size: 2.3 MB - Last synced at: about 5 hours ago - Pushed at: about 6 hours ago - Stars: 14 - Forks: 2
andritefy/Configs
Dotfiles of Silvaire's Arch Linux
Language: JavaScript - Size: 743 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
nf-core/website
Code and files for the main nf-core website.
Language: MDX - Size: 3.73 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 76 - Forks: 246
nf-core/multiplesequencealign
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
Language: Nextflow - Size: 19.6 MB - Last synced at: about 2 hours ago - Pushed at: about 3 hours ago - Stars: 32 - Forks: 14
nf-core/bacass
Simple bacterial assembly and annotation pipeline
Language: Nextflow - Size: 4.92 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 74 - Forks: 58
nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language: Nextflow - Size: 71.5 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1,025 - Forks: 755
nf-core/createtaxdb
Parallelised and automated construction of metagenomic classifier databases of different tools
Language: Nextflow - Size: 4.22 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 9 - Forks: 7
nf-core/variantbenchmarking
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
Language: Nextflow - Size: 11.5 MB - Last synced at: about 9 hours ago - Pushed at: about 11 hours ago - Stars: 29 - Forks: 14
nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
Language: Nextflow - Size: 15.9 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 214 - Forks: 151
nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
Size: 29 GB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 124 - Forks: 397
nf-core/spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Language: Nextflow - Size: 7.02 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 62 - Forks: 23
nf-core/rnafusion
RNA-seq analysis pipeline for detection of gene-fusions
Language: Nextflow - Size: 19.5 MB - Last synced at: about 6 hours ago - Pushed at: about 7 hours ago - Stars: 159 - Forks: 112
nf-core/nascent
Nascent Transcription Processing Pipeline
Language: Nextflow - Size: 8.72 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 19 - Forks: 11
nf-core/configs
Config files used to define parameters specific to compute environments at different Institutions
Language: Nextflow - Size: 47.1 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 99 - Forks: 307
nf-core/pathogensurveillance
Surveillance of pathogens using population genomics and sequencing
Language: Nextflow - Size: 282 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 22 - Forks: 7
nf-core/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Language: Nextflow - Size: 16 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 145 - Forks: 50
nf-core/oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
Language: Nextflow - Size: 5.55 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 69 - Forks: 19
scilus/nf-mouse_flow
Diffusion MRI Pipeline for Mouse
Language: Nextflow - Size: 283 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 1
mahesh-panchal/Nextflow_sandbox
A playground to explore how to implement things in Nextflow and nf-core
Language: Shell - Size: 114 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 7 - Forks: 4
nf-core/scrnaseq
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
Language: Nextflow - Size: 43.5 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 267 - Forks: 188
nf-core/raredisease
Call and score variants from WGS/WES of rare disease patients.
Language: Nextflow - Size: 186 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 100 - Forks: 44
nf-core/mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Language: Nextflow - Size: 25.7 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 35 - Forks: 28
nf-core/scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Language: Nextflow - Size: 2.11 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 55 - Forks: 24
nf-core/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
Language: Nextflow - Size: 6.69 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 201 - Forks: 95
nf-core/scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Language: Nextflow - Size: 40.5 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 35 - Forks: 12
nf-core/logos
Host nf-core logos and templates for making new logos
Size: 43.7 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 6 - Forks: 13
nf-core/smrnaseq
A small-RNA sequencing analysis pipeline
Language: Nextflow - Size: 8.52 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 84 - Forks: 126
nf-core/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Language: Nextflow - Size: 64.1 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 168 - Forks: 84
nf-core/funcscan
(Meta-)genome screening for functional and natural product gene sequences
Language: Nextflow - Size: 24.5 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 87 - Forks: 23
nf-core/rnavar
gatk4 RNA variant calling pipeline
Language: Nextflow - Size: 4.24 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 47 - Forks: 37
nf-core/demultiplex
Demultiplexing pipeline for sequencing data
Language: Nextflow - Size: 13.7 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 46 - Forks: 43
nf-core/genomeqc
Compare the quality of multiple genomes, along with their annotations.
Language: Nextflow - Size: 2.61 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 11 - Forks: 16
nf-core/tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
Language: Nextflow - Size: 2.48 MB - Last synced at: 2 days ago - Pushed at: 15 days ago - Stars: 15 - Forks: 5
nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Language: Nextflow - Size: 9.89 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 137 - Forks: 128
nf-core/circrna
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Language: Nextflow - Size: 70.4 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 54 - Forks: 30
Midnighter/nextflow-gotchas
A collection of unexpected challenges and learnings with nextflow and nf-core.
Language: Shell - Size: 707 KB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 37 - Forks: 9
nf-core/mag
Assembly and binning of metagenomes
Language: Nextflow - Size: 33.4 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 235 - Forks: 126
nf-core/pangenome
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
Language: Nextflow - Size: 4.25 MB - Last synced at: 6 days ago - Pushed at: 15 days ago - Stars: 88 - Forks: 19
nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Language: Nextflow - Size: 16.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 200 - Forks: 136
nf-core/readsimulator
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
Language: Nextflow - Size: 7.64 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 31 - Forks: 8
nf-core/tfactivity
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
Language: Nextflow - Size: 7.32 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 12 - Forks: 4
muneebdev7/metabolt
MetaBolt: Lightning fast & automated metagenomic pipeline powered by Nextflow
Language: Nextflow - Size: 2.12 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 3 - Forks: 0
nf-core/drugresponseeval
Pipeline for testing drug response prediction models in a statistically and biologically sound way.
Language: Nextflow - Size: 7.39 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 12 - Forks: 4
nf-core/isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
Language: Nextflow - Size: 5.78 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 40 - Forks: 18
nf-core/metatdenovo
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Language: Nextflow - Size: 103 MB - Last synced at: about 9 hours ago - Pushed at: about 11 hours ago - Stars: 30 - Forks: 14
nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Language: Nextflow - Size: 23.6 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 165 - Forks: 153
CDCgov/MIRA-NF
Language: Nextflow - Size: 12.2 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 7 - Forks: 6
nf-core/crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Language: Nextflow - Size: 18.4 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 44 - Forks: 31
U-BDS/scnanoseq Fork of nf-core/scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
Language: Nextflow - Size: 40.5 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0
U-BDS/scnanoseq_analysis
Language: R - Size: 789 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
nf-core/hlatyping
Precision HLA typing from next-generation sequencing data
Language: Nextflow - Size: 39.4 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 66 - Forks: 31
nf-core/airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
Language: Nextflow - Size: 11.7 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 60 - Forks: 41
mahesh-panchal/nf-metaomics-daisychain
A meta-pipeline of nf-core pipelines for meta-omic analysis.
Language: Nextflow - Size: 624 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 2
nf-core/createpanelrefs
Generate Panel of Normals, models or other similar references from lots of samples
Language: Nextflow - Size: 2.88 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 8
nf-core/fastquorum
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
Language: Nextflow - Size: 4.96 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 23 - Forks: 13
Multiomics-Analytics-Group/nf-vuegen
nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.
Language: Nextflow - Size: 3.16 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
nf-core/proteinfold
Protein 3D structure prediction pipeline
Language: Nextflow - Size: 8.49 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 79 - Forks: 57
nf-core/mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
Language: Nextflow - Size: 2.88 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 15 - Forks: 18
nf-core/sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
Language: Nextflow - Size: 2.94 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 4 - Forks: 15
nf-core/hicar
Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
Language: Nextflow - Size: 34.7 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 10 - Forks: 8
nf-core/epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
Language: Nextflow - Size: 4.79 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 44 - Forks: 24
nf-core/differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Language: Nextflow - Size: 9.82 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 78 - Forks: 48
nf-core/genomeassembler
Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads
Language: Nextflow - Size: 4.7 MB - Last synced at: about 7 hours ago - Pushed at: about 8 hours ago - Stars: 24 - Forks: 16
nf-core/lncpipe Fork of likelet/LncPipe
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
Language: Nextflow - Size: 29.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 34 - Forks: 25
nf-core/hgtseq
A pipeline to investigate horizontal gene transfer from NGS data
Language: Nextflow - Size: 5.11 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 25 - Forks: 7
nf-core/tbanalyzer
An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.
Language: Nextflow - Size: 5.12 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 3
nf-core/spinningjenny
Pipeline for simulating the first industrial revolution using Agent Based Models.
Language: Nextflow - Size: 2.55 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 4
nf-core/seqinspector
QC pipeline to inspect your sequences
Language: Nextflow - Size: 924 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 31
nf-core/rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
Language: Nextflow - Size: 160 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 54 - Forks: 31
nf-core/riboseq
Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.
Language: Nextflow - Size: 19.7 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 13 - Forks: 10
nf-core/rangeland
Pipeline for remotely sensed imagery. The pipeline processes satellite imagery alongside auxiliary data in multiple steps to arrive at a set of trend files related to land-cover changes.
Language: Nextflow - Size: 3.67 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 7 - Forks: 6
nf-core/rnadnavar
Pipeline for RNA and DNA integrated analysis for somatic mutation detection
Language: Nextflow - Size: 4.21 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 8 - Forks: 9
nf-core/pixelator
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Language: Nextflow - Size: 4.59 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 5
nf-core/radseq
Variant-calling pipeline for Restriction site-associated DNA sequencing (RADseq).
Language: Nextflow - Size: 2.66 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 7 - Forks: 6
nf-core/phyloplace
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
Language: Nextflow - Size: 3.4 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 10 - Forks: 5
nf-core/pairgenomealign
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Language: Nextflow - Size: 2 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 8 - Forks: 4
nf-core/phageannotator
Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
Language: Nextflow - Size: 5.14 MB - Last synced at: 21 days ago - Pushed at: 4 months ago - Stars: 13 - Forks: 9
nf-core/nanostring
An analysis pipeline for Nanostring nCounter expression data.
Language: Nextflow - Size: 4.52 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 14 - Forks: 11
nf-core/molkart
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
Language: Nextflow - Size: 6.54 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 12 - Forks: 11
nf-core/marsseq
MARS-seq v2 pre-processing pipeline with velocity
Language: Nextflow - Size: 3.38 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 7 - Forks: 4
nf-core/metapep
From metagenomes to epitopes and beyond
Language: Nextflow - Size: 8.37 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 12 - Forks: 7
nf-core/lsmquant
A pipeline for processing and analysis of light-sheet microscopy images.
Language: Nextflow - Size: 1.2 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 1
nf-core/kmermaid
k-mer similarity analysis pipeline
Language: Nextflow - Size: 12.8 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 21 - Forks: 13
nf-core/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
Language: Nextflow - Size: 4.33 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 174 - Forks: 80
nf-core/detaxizer
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
Language: Nextflow - Size: 6 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 18 - Forks: 5
nf-core/dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
Language: Nextflow - Size: 45 MB - Last synced at: 23 days ago - Pushed at: 24 days ago - Stars: 22 - Forks: 35
nf-core/demo
nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
Language: Nextflow - Size: 642 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 5 - Forks: 10
nf-core/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
Language: Nextflow - Size: 8.66 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 91 - Forks: 52
nf-core/bamtofastq
Converts bam or cram files to fastq format and does quality control.
Language: Nextflow - Size: 155 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 26 - Forks: 18
nf-core/callingcards
A pipeline for processing calling cards data
Language: Nextflow - Size: 38.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 5 - Forks: 4
nf-core/atacseq
ATAC-seq peak-calling and QC analysis pipeline
Language: Nextflow - Size: 9.72 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 200 - Forks: 125
nf-core/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language: Nextflow - Size: 73.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 53 - Forks: 51
mskcc-omics-workflows/modules
A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
Language: Python - Size: 2.1 MB - Last synced at: 27 days ago - Pushed at: 28 days ago - Stars: 10 - Forks: 6
