nf-core/rnafusion

RNA-seq analysis pipeline for detection of gene-fusions

Language: Nextflow - Size: 19.2 MB - Last synced at: about 10 hours ago - Pushed at: about 11 hours ago - Stars: 153 - Forks: 110

nf-core/scdownstream

A single cell transcriptomics pipeline for QC, integration and making the data presentable

Language: Nextflow - Size: 2.08 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 54 - Forks: 23

nf-core/test-datasets

Test data to be used for automated testing with the nf-core pipelines

Size: 28.8 GB - Last synced at: about 8 hours ago - Pushed at: about 9 hours ago - Stars: 122 - Forks: 395

nf-core/configs

Config files used to define parameters specific to compute environments at different Institutions

Language: Nextflow - Size: 47 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 98 - Forks: 303

andritefy/Configs

Dotfiles of Silvaire's Arch Linux

Language: JavaScript - Size: 743 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

nf-core/website

Code and files for the main nf-core website.

Language: MDX - Size: 3.73 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 75 - Forks: 246

nf-core/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

Language: Nextflow - Size: 158 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 354 - Forks: 837

muneebdev7/metabolt

MetaBolt: Lightning fast & automated metagenomic pipeline powered by Nextflow

Language: Nextflow - Size: 2.12 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 3 - Forks: 0

nf-core/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Language: Nextflow - Size: 71.5 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 1,016 - Forks: 748

nf-core/tfactivity

Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.

Language: Nextflow - Size: 7.32 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 11 - Forks: 4

nf-core/genomeqc

Compare the quality of multiple genomes, along with their annotations.

Language: Nextflow - Size: 2.61 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 10 - Forks: 16

CDCgov/MIRA-NF

Language: Nextflow - Size: 12.1 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 7 - Forks: 6

U-BDS/scnanoseq Fork of nf-core/scnanoseq

Single-cell/nuclei pipeline for data derived from Oxford Nanopore

Language: Nextflow - Size: 40.5 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

nf-core/pathogensurveillance

Surveillance of pathogens using population genomics and sequencing

Language: Nextflow - Size: 282 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 22 - Forks: 6

Midnighter/nextflow-gotchas

A collection of unexpected challenges and learnings with nextflow and nf-core.

Language: Shell - Size: 707 KB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 36 - Forks: 9

U-BDS/scnanoseq_analysis

Language: R - Size: 789 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0

nf-core/scnanoseq

Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

Language: Nextflow - Size: 40.5 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 34 - Forks: 10

nf-core/airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

Language: Nextflow - Size: 11.7 MB - Last synced at: about 10 hours ago - Pushed at: about 11 hours ago - Stars: 60 - Forks: 41

nf-core/oncoanalyser

A comprehensive cancer DNA/RNA analysis and reporting pipeline

Language: Nextflow - Size: 5.58 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 66 - Forks: 17

nf-core/methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

Language: Nextflow - Size: 23.6 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 165 - Forks: 153

mahesh-panchal/nf-metaomics-daisychain

A meta-pipeline of nf-core pipelines for meta-omic analysis.

Language: Nextflow - Size: 624 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 3 - Forks: 2

Multiomics-Analytics-Group/nf-vuegen

nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

Language: Nextflow - Size: 3.16 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 2 - Forks: 0

nf-core/spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Language: Nextflow - Size: 7.02 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 61 - Forks: 22

mahesh-panchal/Nextflow_sandbox

A playground to explore how to implement things in Nextflow and nf-core

Language: Shell - Size: 85.9 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 7 - Forks: 4

nf-core/rnavar

gatk4 RNA variant calling pipeline

Language: Nextflow - Size: 4.2 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 46 - Forks: 37

nf-core/tools

Python package with helper tools for the nf-core community.

Language: Python - Size: 17.1 MB - Last synced at: 12 days ago - Pushed at: 19 days ago - Stars: 255 - Forks: 201

nf-core/ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Language: Nextflow - Size: 16.6 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 197 - Forks: 132

nf-core/createpanelrefs

Generate Panel of Normals, models or other similar references from lots of samples

Language: Nextflow - Size: 2.86 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 9 - Forks: 8

nf-core/fastquorum

Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)

Language: Nextflow - Size: 4.97 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 23 - Forks: 13

nf-core/differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

Language: Nextflow - Size: 9.66 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 78 - Forks: 45

nf-core/taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Language: Nextflow - Size: 15.8 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 142 - Forks: 48

nf-core/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Language: Nextflow - Size: 100 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 439 - Forks: 439

nf-core/genomeassembler

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Language: Nextflow - Size: 4.65 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 24 - Forks: 15

nf-core/lncpipe Fork of likelet/LncPipe

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Language: Nextflow - Size: 29.5 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 34 - Forks: 25

nf-core/sammyseq

Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.

Language: Nextflow - Size: 2.97 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 4 - Forks: 15

nf-core/tumourevo

Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

Language: Nextflow - Size: 2.48 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 14 - Forks: 5

nf-core/smrnaseq

A small-RNA sequencing analysis pipeline

Language: Nextflow - Size: 8.51 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 83 - Forks: 127

nf-core/seqinspector

QC pipeline to inspect your sequences

Language: Nextflow - Size: 924 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 12 - Forks: 31

nf-core/raredisease

Call and score variants from WGS/WES of rare disease patients.

Language: Nextflow - Size: 186 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 98 - Forks: 44

nf-core/proteinfold

Protein 3D structure prediction pipeline

Language: Nextflow - Size: 7.98 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 78 - Forks: 55

nf-core/nascent

Nascent Transcription Processing Pipeline

Language: Nextflow - Size: 8.61 MB - Last synced at: about 22 hours ago - Pushed at: about 22 hours ago - Stars: 19 - Forks: 11

nf-core/nanoseq

Nanopore demultiplexing, QC and alignment pipeline

Language: Nextflow - Size: 6.67 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 198 - Forks: 93

nf-core/metatdenovo

Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.

Language: Nextflow - Size: 103 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 29 - Forks: 14

nf-core/mag

Assembly and binning of metagenomes

Language: Nextflow - Size: 30.4 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 232 - Forks: 122

nf-core/hlatyping

Precision HLA typing from next-generation sequencing data

Language: Nextflow - Size: 39.3 MB - Last synced at: 11 days ago - Pushed at: 13 days ago - Stars: 65 - Forks: 31

nf-core/fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

Language: Nextflow - Size: 4.33 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 174 - Forks: 80

nf-core/eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Language: Nextflow - Size: 64.1 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 161 - Forks: 83

nf-core/drugresponseeval

Pipeline for testing drug response prediction models in a statistically and biologically sound way.

Language: Nextflow - Size: 5.18 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 7 - Forks: 4

nf-core/dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

Language: Nextflow - Size: 45 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 22 - Forks: 35

nf-core/demultiplex

Demultiplexing pipeline for sequencing data

Language: Nextflow - Size: 13.6 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 46 - Forks: 43

nf-core/circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Language: Nextflow - Size: 70.3 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 54 - Forks: 30

nf-core/chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Language: Nextflow - Size: 15.9 MB - Last synced at: 4 days ago - Pushed at: about 1 month ago - Stars: 211 - Forks: 151

nf-core/createtaxdb

Parallelised and automated construction of metagenomic classifier databases of different tools

Language: Nextflow - Size: 3.27 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 9 - Forks: 7

nf-core/lsmquant

A pipeline for processing and analysis of light-sheet microscopy images.

Language: Nextflow - Size: 1.09 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 1

nf-core/logos

Host nf-core logos and templates for making new logos

Size: 41.2 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 5 - Forks: 13

nf-core/bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Language: Nextflow - Size: 73.2 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 53 - Forks: 51

mskcc-omics-workflows/modules

A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

Language: Python - Size: 2.1 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 10 - Forks: 6

borgessbarbara/TranscriptClean-NF

An implementation of TranscriptClean tool into a Nextflow module

Size: 0 Bytes - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

nf-core/gh-actions-lint 📦

GitHub Action to run nf-core code linting on a Nextflow pipeline

Language: Shell - Size: 9.77 KB - Last synced at: 20 days ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 4

nf-core/mcmicro

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

Language: Nextflow - Size: 2.94 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 16

davetang/rnaseq

RNA-seq analyses.

Language: Shell - Size: 5.52 MB - Last synced at: 5 days ago - Pushed at: 6 months ago - Stars: 9 - Forks: 5

nf-core/vscode-extensionpack

A VSCode extension pack for nf-core developers.

Size: 240 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 7

nf-core/proteinfamilies

Generation and update of protein families

Language: Nextflow - Size: 1.52 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 1

nf-core/phyloplace

nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.

Language: Nextflow - Size: 3.38 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 7 - Forks: 4

nf-core/pangenome

Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.

Language: Nextflow - Size: 4.23 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 80 - Forks: 18

nf-core/stableexpression

Pipeline dedicated to finding the most stable genes among a single or multiple expression dataset(s). It is useful in particular for finding the most suitable qPCR reference genes for a specific species.

Language: Nextflow - Size: 992 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

nf-core/nanostring

An analysis pipeline for Nanostring nCounter expression data.

Language: Nextflow - Size: 4.5 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 13 - Forks: 11

nf-core/phageannotator

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

Language: Nextflow - Size: 5.14 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 12 - Forks: 8

natanast/nextflow_scripts

This repository includes some simple workflows written in Nextflow.

Language: Nextflow - Size: 5.86 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

nf-core/rangeland

Pipeline for remotely sensed imagery. The pipeline processes satellite imagery alongside auxiliary data in multiple steps to arrive at a set of trend files related to land-cover changes.

Language: Nextflow - Size: 3.63 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 4

nf-core/hic

Analysis of Chromosome Conformation Capture data (Hi-C)

Language: Nextflow - Size: 3.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 95 - Forks: 57

nf-core/isoseq

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Language: Nextflow - Size: 5.75 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 32 - Forks: 16

georgiesamaha/configBuilder-nf

Nextflow config builder scripts for supported HPC infrastructures.

Language: Python - Size: 82 KB - Last synced at: 9 days ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 1

nf-core/rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Language: Nextflow - Size: 160 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 50 - Forks: 29

nf-core/bamtofastq

Converts bam or cram files to fastq format and does quality control.

Language: Nextflow - Size: 155 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 23 - Forks: 14

nf-core/kmermaid

k-mer similarity analysis pipeline

Language: Nextflow - Size: 12.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 20 - Forks: 13

nf-core/proteomicslfq

Proteomics label-free quantification (LFQ) analysis pipeline

Language: Nextflow - Size: 3.59 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 33 - Forks: 20

nf-core/pgdb Fork of bigbio/pgdb

The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.

Language: Nextflow - Size: 3.07 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 8

nf-core/callingcards

A pipeline for processing calling cards data

Language: Nextflow - Size: 38.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 4

nf-core/sublime Fork of peterk87/sublime-nextflow

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

Language: Python - Size: 654 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 6 - Forks: 4

nf-core/variantcatalogue

Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.

Language: Nextflow - Size: 184 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 9 - Forks: 4

U-BDS/training_guides

Compilation of training guides

Language: Shell - Size: 7.1 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0

nf-core/viralintegration

Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.

Language: Python - Size: 3.37 MB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 17 - Forks: 9

nf-core/pairgenomealign

Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

Language: Nextflow - Size: 1.94 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 3

nf-core/gwas

UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies

Language: Nextflow - Size: 2.78 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 24 - Forks: 18

nf-core/datasync

nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks

Language: Nextflow - Size: 555 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 8 - Forks: 3

nf-core/metapep

From metagenomes to epitopes and beyond

Language: Nextflow - Size: 8.35 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 11 - Forks: 6

nf-core/hgtseq

A pipeline to investigate horizontal gene transfer from NGS data

Language: Nextflow - Size: 5.2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 24 - Forks: 6

santorsola-teaching/class-lab-adv-omics

Repository for the Course "Laboratory of Advanced Bioinformatics for Omics Sciences", in the Curriculum "Molecular and Digital Biology" of the M.Sc. Molecular Biology and Genetics, University of Pavia

Language: HTML - Size: 299 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 3 - Forks: 1

seqeralabs/action-tower-launch

GitHub Action to launch a workflow using Seqera Platform

Language: Shell - Size: 887 KB - Last synced at: 8 days ago - Pushed at: 5 months ago - Stars: 0 - Forks: 1

nf-core/marsseq

MARS-seq v2 pre-processing pipeline with velocity

Language: Nextflow - Size: 3.36 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 4

nf-core/clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

Language: Nextflow - Size: 39.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 21 - Forks: 30

nf-core/radseq

Variant-calling pipeline for Restriction site-associated DNA sequencing (RADseq).

Language: Nextflow - Size: 2.64 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 5

nf-core/hicar

Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.

Language: Nextflow - Size: 34.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 7 - Forks: 6

carpentries-incubator/workflows-nextflow

Workflow management with Nextflow and nf-core

Language: Nextflow - Size: 20.9 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 25 - Forks: 36

nf-core/detaxizer

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Language: Nextflow - Size: 5.99 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 14 - Forks: 5

srikanth-srinvas/dragonflye-hybrid-genome-assembly

Nextflow-powered Dragonflye Pipeline for Assembling Genomes from Nanopore and Illumina Reads

Language: Nextflow - Size: 224 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

nf-core/tbanalyzer

An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.

Language: Nextflow - Size: 5.12 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 6 - Forks: 1

nf-core/rnadnavar

Pipeline for RNA and DNA integrated analysis for somatic mutation detection

Language: Nextflow - Size: 4.19 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 8

nf-core/variantbenchmarking

A nextflow variant benchmarking pipeline - premature

Language: Nextflow - Size: 3.66 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 11 - Forks: 7