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GitHub / nf-core / tfactivity

Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftfactivity

Stars: 6
Forks: 0
Open Issues: 2

License: mit
Language: Nextflow
Repo Size: 5.07 MB
Dependencies: 73

Created: 2 months ago
Updated: 22 days ago
Last pushed: 25 days ago
Last synced: 24 days ago

Topics: nextflow, nf-core, open-chromatin-regions, pipeline, transcription-factors, transcriptomics, workflow

Files
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    Readme
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    Dependencies
    modules/nf-core/samtools/reheader/environment.yml conda
    .github/workflows/awstest.yml actions
    .github/workflows/branch.yml actions
    .github/workflows/ci.yml actions
    .github/workflows/clean-up.yml actions
    • actions/stale 28ca1036281a5e5922ead5184a1bbf96e5fc984e composite
    .github/workflows/download_pipeline.yml actions
    .github/workflows/fix-linting.yml actions
    .github/workflows/linting.yml actions
    .github/workflows/linting_comment.yml actions
    .github/workflows/release-announcements.yml actions
    modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/meta.yml cpan
    modules/nf-core/bedtools/merge/meta.yml cpan
    modules/nf-core/bedtools/sort/meta.yml cpan
    modules/nf-core/bedtools/subtract/meta.yml cpan
    modules/nf-core/cat/cat/meta.yml cpan
    modules/nf-core/deseq2/differential/meta.yml cpan
    modules/nf-core/gawk/meta.yml cpan
    subworkflows/nf-core/utils_nextflow_pipeline/meta.yml cpan
    subworkflows/nf-core/utils_nfcore_pipeline/meta.yml cpan
    subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml cpan
    pyproject.toml pypi
    modules/nf-core/samtools/faidx/meta.yml cpan
    modules/nf-core/samtools/reheader/meta.yml cpan
    .github/workflows/awsfulltest.yml actions
    modules/local/report/create/app/bundle/package.json npm
    modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/environment.yml conda
    modules/nf-core/bedtools/merge/environment.yml conda
    modules/nf-core/bedtools/sort/environment.yml conda
    modules/nf-core/bedtools/subtract/environment.yml conda
    modules/nf-core/cat/cat/environment.yml conda
    modules/nf-core/deseq2/differential/environment.yml conda
    modules/nf-core/gawk/environment.yml conda
    modules/nf-core/samtools/faidx/environment.yml conda
    modules/local/report/create/app/bundle/package-lock.json npm