Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub / nf-core / viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fviralrecon

Stars: 108
Forks: 97
Open Issues: 34

License: mit
Language: Nextflow
Repo Size: 9.67 MB
Dependencies: 12

Created: about 4 years ago
Updated: 8 days ago
Last pushed: 8 days ago
Last synced: 8 days ago

Commit Stats

Commits: 2477
Authors: 24
Mean commits per author: 103.21
Development Distribution Score: 0.359
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/nf-core/viralrecon

Topics: amplicon, artic, assembly, covid-19, covid19, illumina, long-read-sequencing, metagenomics, nanopore, nextflow, nf-core, ont, oxford-nanopore, pipeline, sars-cov-2, variant-calling, viral, virus, workflow

Files
    Loading...
    Readme
    Loading...
    Dependencies
    .github/workflows/awsfulltest.yml actions
    .github/workflows/awstest.yml actions
    .github/workflows/branch.yml actions
    .github/workflows/ci.yml actions
    .github/workflows/fix-linting.yml actions
    .github/workflows/linting.yml actions
    .github/workflows/linting_comment.yml actions
    modules/nf-core/abacas/meta.yml cpan
    modules/nf-core/artic/guppyplex/meta.yml cpan
    modules/nf-core/artic/minion/meta.yml cpan
    modules/nf-core/bandage/image/meta.yml cpan
    modules/nf-core/bcftools/consensus/meta.yml cpan
    modules/nf-core/bcftools/filter/meta.yml cpan
    modules/nf-core/bcftools/mpileup/meta.yml cpan
    modules/nf-core/bcftools/norm/meta.yml cpan
    modules/nf-core/bcftools/query/meta.yml cpan
    modules/nf-core/bcftools/sort/meta.yml cpan
    modules/nf-core/bcftools/stats/meta.yml cpan
    modules/nf-core/bedtools/getfasta/meta.yml cpan
    modules/nf-core/bedtools/maskfasta/meta.yml cpan
    modules/nf-core/bedtools/merge/meta.yml cpan
    modules/nf-core/blast/blastn/meta.yml cpan
    modules/nf-core/blast/makeblastdb/meta.yml cpan
    modules/nf-core/bowtie2/align/meta.yml cpan
    modules/nf-core/bowtie2/build/meta.yml cpan
    modules/nf-core/cat/fastq/meta.yml cpan
    modules/nf-core/custom/dumpsoftwareversions/meta.yml cpan
    modules/nf-core/custom/getchromsizes/meta.yml cpan
    modules/nf-core/fastp/meta.yml cpan
    modules/nf-core/fastqc/meta.yml cpan
    modules/nf-core/gunzip/meta.yml cpan
    modules/nf-core/ivar/consensus/meta.yml cpan
    modules/nf-core/ivar/trim/meta.yml cpan
    modules/nf-core/ivar/variants/meta.yml cpan
    modules/nf-core/kraken2/kraken2/meta.yml cpan
    modules/nf-core/minia/meta.yml cpan
    modules/nf-core/mosdepth/meta.yml cpan
    modules/nf-core/nanoplot/meta.yml cpan
    modules/nf-core/nextclade/datasetget/meta.yml cpan
    modules/nf-core/nextclade/run/meta.yml cpan
    modules/nf-core/pangolin/meta.yml cpan
    modules/nf-core/picard/collectmultiplemetrics/meta.yml cpan
    modules/nf-core/picard/markduplicates/meta.yml cpan
    modules/nf-core/plasmidid/meta.yml cpan
    modules/nf-core/pycoqc/meta.yml cpan
    modules/nf-core/quast/meta.yml cpan
    modules/nf-core/samtools/flagstat/meta.yml cpan
    modules/nf-core/samtools/idxstats/meta.yml cpan
    modules/nf-core/samtools/index/meta.yml cpan
    modules/nf-core/samtools/sort/meta.yml cpan
    modules/nf-core/samtools/stats/meta.yml cpan
    modules/nf-core/samtools/view/meta.yml cpan
    modules/nf-core/spades/meta.yml cpan
    modules/nf-core/tabix/bgzip/meta.yml cpan
    modules/nf-core/tabix/tabix/meta.yml cpan
    modules/nf-core/unicycler/meta.yml cpan
    modules/nf-core/untar/meta.yml cpan
    modules/nf-core/vcflib/vcfuniq/meta.yml cpan
    subworkflows/nf-core/bam_markduplicates_picard/meta.yml cpan
    subworkflows/nf-core/bam_sort_stats_samtools/meta.yml cpan
    subworkflows/nf-core/bam_stats_samtools/meta.yml cpan
    subworkflows/nf-core/fastq_align_bowtie2/meta.yml cpan
    pyproject.toml pypi