Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: artic
replikation/poreCov
SARS-CoV-2 workflow for nanopore sequence data
Language: Nextflow - Size: 28.5 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 39 - Forks: 15
nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Language: Nextflow - Size: 9.67 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 108 - Forks: 97
youngpopeugene/ComputerSystems
ITMO — Semester 5 — ComputerSystems
Size: 21.5 KB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
NONVME/Nord
Nvim Nord color palette
Language: Lua - Size: 13.7 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
Shinji13/The_Tale
Open source medium clone
Language: Svelte - Size: 99.6 KB - Last synced: 6 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
wchehadeh/HIV-CODEHOP
CODEHOP-mediated genotyping of HIV-1
Size: 991 KB - Last synced: 8 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
musacatak/scholera
Article Search Web-App
Language: JavaScript - Size: 737 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0
catg-umag/ncov2019-ont-nf
Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools
Language: Python - Size: 288 KB - Last synced: 2 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 1
will-rowe/artic-pipeline-example
quick demo of the ARTIC pipeline
Language: Jupyter Notebook - Size: 63.7 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 3 - Forks: 0
NordicESMhub/NEGI-Abisko-2019
Climate science at high latitudes: eScience for linking Arctic measurements and modeling
Language: Jupyter Notebook - Size: 151 MB - Last synced: about 8 hours ago - Pushed: over 3 years ago - Stars: 5 - Forks: 33
marithetland/susCovONT
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Language: Python - Size: 171 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 2
masikol/kromsatel
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
Language: Python - Size: 314 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
charlesfoster/ont-analysis-toolkit
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
Language: Python - Size: 866 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 6 - Forks: 0
will-rowe/artic-tools
a set of tools for viral amplicon schemes
Language: C++ - Size: 2.47 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 6 - Forks: 2