GitHub topics: genotyping-by-sequencing
swvanderlaan/MonopogenLite
Germline SNV calling and phasing from single cell sequencing (for macOS Sequoia and Rocky8).
Language: Python - Size: 5.36 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0
lvclark/polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
Language: HTML - Size: 18.4 MB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 31 - Forks: 9
petersm3/buildtassel3
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
Language: Shell - Size: 62.5 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
thierrygosselin/radiator
RADseq Data Exploration, Manipulation and Visualization using R
Language: HTML - Size: 11 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 59 - Forks: 23
thierrygosselin/stackr
stackr: an R package to run stacks software pipeline
Language: HTML - Size: 20.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 29 - Forks: 8
thierrygosselin/assigner
Population assignment analysis using R
Language: HTML - Size: 30.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 17 - Forks: 6
natforsdick/Weta_GBS
Repo containing all scripts associated with Mahoenui giant wētā population genomic analysis from GBS data
Language: Shell - Size: 85 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
dmgatti/GBRS_Tutorial
Tutorial for Genotyping by RNA Sequencing (GBRS), which quantifies transcripts via RNASeq and genotypes the samples using SNPs in transcripts.
Language: Shell - Size: 9.74 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
dantaki/SV2
Support Vector Structural Variation Genotyper
Language: Python - Size: 10.3 MB - Last synced at: 10 months ago - Pushed at: about 5 years ago - Stars: 58 - Forks: 11
Cristianetaniguti/Reads2Map
WDL workflows to build genetic maps from sequencing reads
Language: WDL - Size: 167 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 0
Gregor-Mendel-Institute/SNPmatch
A simple python library to identify the most likely strain from the population
Language: Python - Size: 92.4 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 5
Andreater/NeuroPGx
A clinical decision-support system to identify pharmacogenomics profiles based on subjects genotype of five core genes. The paper has been published in the Journal of Personalized Medicine.
Language: R - Size: 780 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 0
wchehadeh/HIV-CODEHOP
CODEHOP-mediated genotyping of HIV-1
Size: 991 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
Hanryi/MarkerTech
An advanced genotyping pipeline by next-generation sequencing (NGS) technology
Language: Python - Size: 59.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
AlgoLab/MALVIRUS
A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
Language: JavaScript - Size: 5.87 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2
g-pacheco/PigeonBreedsGenomics
🕊 This repository is associated with the manuscript Pacheco et al. (2020).
Language: R - Size: 41.7 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1
rbpisupati/nf-snpmatch
Nextflow pipeline for SNPmatch (https://github.com/Gregor-Mendel-Institute/SNPmatch.git)
Language: Nextflow - Size: 62.5 KB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1
CarolinaPB/gbs-genetic-fitness
pipeline to perform gbs and genetic fitness analysis
Language: Shell - Size: 1.17 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
