thierrygosselin/radiator

RADseq Data Exploration, Manipulation and Visualization using R

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HaidYi/DASC

Detecting hidden batch factors through data adaptive adjustment for biological effects

Language: R - Size: 1.58 MB - Last synced: 17 days ago - Pushed: about 6 years ago - Stars: 3 - Forks: 3

MartinLoza/Canek

Unbiased integration of single cell transcriptomes.

Language: R - Size: 38.4 MB - Last synced: 23 days ago - Pushed: 5 months ago - Stars: 5 - Forks: 1

chriscainx/mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

Language: Python - Size: 1.05 MB - Last synced: 8 days ago - Pushed: over 1 year ago - Stars: 69 - Forks: 33

symbioticMe/proBatch

Tools for Batch Effects Diagnostics and Correction

Language: R - Size: 4.73 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 14 - Forks: 6

symbioticMe/batch_effects_workflow_code

Code accompanying batch effects processing workflow for "omic" data, mainly targeted for proteomics

Language: R - Size: 12.2 MB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 2

fedeago/NewWave

NewWave

Language: R - Size: 6.32 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 4 - Forks: 2

zhangyuqing/ComBat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data

Language: R - Size: 597 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 142 - Forks: 39

uds-helms/BEclear

Correction of batch effects in DNA methylation data

Language: R - Size: 1.07 MB - Last synced: 7 days ago - Pushed: about 1 year ago - Stars: 3 - Forks: 0

nkimoto/sc_batch_remove

Wrapper of batch removal method for scRNA-seq

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theislab/kBET

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

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mbongaerts/Metchalizer

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tengfei-emory/scBatch

Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment

Language: R - Size: 1.85 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 17 - Forks: 9

SLINGhub/StratiRandom

R script and Shiny app to perform stratified randomisation

Language: R - Size: 95.7 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

pavlin-policar/ALRA

Imputation method for scRNA-seq based on low-rank approximation

Language: Python - Size: 2.69 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

stopsack/batchtma

batchtma: R package to adjust for batch effects, for example between tissue microarrays

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biolab/tsne-embedding

Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification

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tengfei-emory/QuantNorm

Mitigating the adverse impact of batch effects in sample pattern detection

Language: R - Size: 5.98 MB - Last synced: 16 days ago - Pushed: over 4 years ago - Stars: 9 - Forks: 2

KChen-lab/bcd

Visualization and analysis of single-cell RNA-seq data by alternative clustering

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genepattern/ComBat_Seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data. Credits: https://github.com/zhangyuqing/ComBat-seq

Language: R - Size: 57 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

SkadiEye/RZiMM

RZiMM: A Regularized Zero-inflated Mixture Model for scRNA-seq Data

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jumphone/BEER

BEER: Batch EffEct Remover for single-cell data

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neuroquant/fmri-site-effects

Uses regression and factor model approach to correct for site effects in fMRI volumes

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mRcSchwering/Lattirl

Package for analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.

Language: R - Size: 92 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

mRcSchwering/scRNAseq_batchEffects

Analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.

Language: R - Size: 14.1 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1

uds-helms/BEclear-CL

Correction of batch effects with BEclear as a command line tool

Language: R - Size: 806 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

neuroquant/tutorial-prni-2017

This repository contains iPython notebooks that run on the octave kernel to accompany tutorial and slides presented at PRNI

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