Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: umap

Repositories

LorenzoStucchi/MapathonData2Umap

Repository to automatically download data about an ongoing mapathon

Language: Shell - Size: 166 MB - Last synced: about 16 hours ago - Pushed: about 17 hours ago - Stars: 0 - Forks: 0

GiulioRiggio/UMAP-R

UMAP testing

Language: R - Size: 799 KB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

saehm/DruidJS

A JavaScript Library for Dimensionality Reduction

Language: JavaScript - Size: 6.15 MB - Last synced: about 17 hours ago - Pushed: 10 months ago - Stars: 105 - Forks: 9

Arize-ai/phoenix

AI Observability & Evaluation

Language: Jupyter Notebook - Size: 74.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2,589 - Forks: 182

tkonopka/umap

Uniform Manifold Approximation and Projection - R package

Language: R - Size: 662 KB - Last synced: 2 days ago - Pushed: about 1 month ago - Stars: 129 - Forks: 16

curiosity-ai/umap-sharp

C# library for fast embeddings projection using Uniform Manifold Approximation and Projection

Language: C# - Size: 7.3 MB - Last synced: 3 days ago - Pushed: 6 months ago - Stars: 34 - Forks: 5

parashardhapola/scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Language: Python - Size: 32.6 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 90 - Forks: 12

huyndao/content-based-image-retrieval

Reverse Image Search or Content Based Image Retrieval using low dimensional embeddings

Language: Jupyter Notebook - Size: 4.46 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 0

jlmelville/uwot

An R package implementing the UMAP dimensionality reduction method.

Language: R - Size: 59 MB - Last synced: 11 days ago - Pushed: 13 days ago - Stars: 308 - Forks: 32

Ameobea/osu-beatmap-atlas

An interactive atlas of osu! beatmaps implemented as a rich embedding visualization

Language: Jupyter Notebook - Size: 697 KB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 7 - Forks: 0

kris96tian/sc-RNAseq_analysis

Single-cell RNA data analysis using R (Seurat) , Python (Scanpy), and Julia.

Language: Jupyter Notebook - Size: 4.53 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0

vda-lab/lensed_umap

Functions that filter UMAP graphs using domain knowledge.

Language: Jupyter Notebook - Size: 82.2 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 1 - Forks: 0

dillondaudert/UMAP.jl

Uniform Manifold Approximation and Projection (UMAP) implementation in Julia

Language: Julia - Size: 2.72 MB - Last synced: 14 days ago - Pushed: 4 months ago - Stars: 127 - Forks: 18

pityka/lamp

deep learning and scientific computing framework with native CPU and GPU backend for the Scala programming language

Language: Scala - Size: 43.5 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 25 - Forks: 4

lachlanjc/spatial-twitter-search

Prototype of embeddings-based search of Twitter likes/bookmarks on an infinite canvas

Language: TypeScript - Size: 2.35 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0

Renumics/renumics-rag

Visualization for a Retrieval-Augmented Generation (RAG) Assistant 🤖➕📚🟰❤️

Language: Python - Size: 16.6 MB - Last synced: 24 days ago - Pushed: about 2 months ago - Stars: 131 - Forks: 30

thiswillbeyourgithub/AnnA_Anki_neuronal_Appendix

Using machine learning on your anki collection to enhance the scheduling via semantic clustering and semantic similarity

Language: Python - Size: 3.55 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 57 - Forks: 1

genular/pandora

PANDORA - Predictive Analytics aNd Data Oriented Research Applications :computer:

Language: Vue - Size: 16 MB - Last synced: 30 days ago - Pushed: about 1 month ago - Stars: 133 - Forks: 20

gulabpatel/Machine-Learning

Regression, Classification, Clustering, Dimension-reduction, Anomaly detection

Language: Jupyter Notebook - Size: 23.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 6 - Forks: 2

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

Language: R - Size: 68.2 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 117 - Forks: 19

lmcinnes/umap

Uniform Manifold Approximation and Projection

Language: Python - Size: 58.9 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 6,930 - Forks: 762

PAIR-code/umap-js

JavaScript implementation of UMAP

Language: JavaScript - Size: 2.39 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 345 - Forks: 29

stemangiola/tidyseurat

Seurat meets tidyverse. The best of both worlds.

Language: R - Size: 45.4 MB - Last synced: 27 days ago - Pushed: 3 months ago - Stars: 142 - Forks: 12

umap-project/Leaflet.Storage 📦

Manage map and features with Leaflet and expose them for backend storage through an API.

Language: JavaScript - Size: 3.22 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 151 - Forks: 56

xieguigang/sciBASIC

sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.

Language: Visual Basic .NET - Size: 315 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 74 - Forks: 35

prihoda/usum

USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE

Language: Python - Size: 1.26 MB - Last synced: 20 days ago - Pushed: over 3 years ago - Stars: 11 - Forks: 0

juliazubko/clustering_dashplotly

Year 1 Data Science (HVE) course assignment (2022): cluster the data, make a dashboard with some exploratory plots

Language: Python - Size: 45.9 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

LorenzoStucchi/umap_OSM_overpassdata

Automated script for the download of OSM data with Overpass API to be used in uMap.

Language: Shell - Size: 1.07 GB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

davisidarta/dbMAP

A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.

Language: Python - Size: 29 MB - Last synced: 17 days ago - Pushed: about 3 years ago - Stars: 45 - Forks: 4

LeverForChange/proposal-landscape

An interactive visualization of Lever for Change's proposal landscape built on the Ploty Dash framework.

Language: Python - Size: 86.9 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 2

milescsmith/ReductionWrappers

R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)

Language: R - Size: 5.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 35 - Forks: 4

YontiLevin/Embeddings2Image

create "Karpathy's style" 2d images out of your image embeddings

Language: Python - Size: 18.6 MB - Last synced: 10 days ago - Pushed: over 1 year ago - Stars: 65 - Forks: 11

aitech-lab/point.cloud Fork of peko/bbgl

OpenGL clusters visualisation

Language: C - Size: 21.7 MB - Last synced: 2 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

Shola-Ayeotan/Graph-Based-Recommender-System

A Graph-based recommender system, recommending the best product for eCommerce shoppers based on their purchase and search history

Language: Jupyter Notebook - Size: 8.76 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

tag-bio/umap-java

A Uniform Manifold Approximation and Projection (UMAP) library for Java, developed by Tag.bio in collaboration with Real Time Genomics.

Language: Java - Size: 799 KB - Last synced: 17 days ago - Pushed: over 2 years ago - Stars: 23 - Forks: 8

ropensci-archive/umapr 📦

:no_entry: ARCHIVED :no_entry: Wraps UMAP Algorithm for Dimension Reduction

Language: R - Size: 5.3 MB - Last synced: 10 days ago - Pushed: about 2 years ago - Stars: 112 - Forks: 16

tomthe/hackmap

Hackmap

Language: HTML - Size: 524 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

divyank97/Text_mining_Project

This project consists of models trained on text data which was created by Chat GPT and then I tested the model on Unlabelled dataset. I have also then used UMAP to identify clusters and created indepth critical analysis report

Language: Jupyter Notebook - Size: 700 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

El-Bahnasawi/Walmart-Dataset-Analysis

Language: Jupyter Notebook - Size: 4.34 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

shlienlab/raccoon

Multi-scale clustering in Python

Language: Python - Size: 6.14 MB - Last synced: 19 days ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 3

brijeshhere/Unsupervised-Learning-Cluster-Streamlit-Dashboard

By utilizing various features, the Project assists the organization in categorizing countries and determining which country the NGO should allocate funds to.

Language: Jupyter Notebook - Size: 19.1 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

dmeoli/OnlineRetail

Data Mining project 2020/2021 @ University of Pisa

Language: Jupyter Notebook - Size: 235 MB - Last synced: 24 days ago - Pushed: about 3 years ago - Stars: 11 - Forks: 4

xnought/protein-scatter

Visualizing 3D fragments of proteins in a scatterplot

Language: Jupyter Notebook - Size: 1.77 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

louisgeisler/Doc2Map

Transform a corpus of text documents (any kind) into a map with different zoom levels and topics names to summarise sub corpus of similar docs.

Language: HTML - Size: 7.62 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 25 - Forks: 5

annahadji/handwriting-styles

Visualisation exploring handwriting styles using convolutional autoencoders and clustering

Language: Jupyter Notebook - Size: 1.33 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

hyungkwonko/umato

Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)

Language: Jupyter Notebook - Size: 196 MB - Last synced: 3 months ago - Pushed: 8 months ago - Stars: 105 - Forks: 11

gustafssonlinnea/UMAP-vs-PaCMAP

This is a dimensionality reduction project in the course DD2470 Advanced Topics in Visualization and Computer Graphics at KTH Royal Institute of Technology, Stockholm (2024), made by Linnéa Gustafsson.

Language: Python - Size: 123 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

colurw/wiki_abstracts_NLP

Document-level semantic clustering. Unsupervised topic modelling.

Language: Python - Size: 1.26 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

fannykassapian/python_json_coordinates

How to build a JSON of coordinates (for Leaflet markers) based on an UMAP embedding (Python)

Language: Jupyter Notebook - Size: 249 KB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

fannykassapian/python_dimensionality_reduction

Dimensionality reduction methodologies to map data (Python)

Language: Jupyter Notebook - Size: 111 KB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

parisa-salmanian/DimVis

Interpreting Visual Clusters in Dimensionality Reduction With Explainable Boosting Machine

Language: Python - Size: 29.6 MB - Last synced: 19 days ago - Pushed: about 2 months ago - Stars: 1 - Forks: 1

vcardonas/linkedin-project

Proyecto de webscraping en Linkedin y NLP. Tiene como objetivo analizar las herramientas más demandas actualmente para Data Analyst o Analista de Datos en Colombia.

Language: Jupyter Notebook - Size: 7.69 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

oleksiiKhlystun/Diploma_fetal_health

Diploma on "Development of software for data analysis and visualization based on machine learning methods". Data-set - Fetal Health Classification. https://www.kaggle.com/datasets/andrewmvd/fetal-health-classification

Language: Python - Size: 1.81 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

DerAlexmeister/umap2Plus Fork of nccgroup/umap2

Umap2 is the second revision of NCC Group's python based USB host security assessment tool.

Language: Python - Size: 652 KB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

epigen/unsupervised_analysis

A general purpose Snakemake workflow to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

Language: Python - Size: 56 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 10 - Forks: 0

tianlinhe/kidney_diagnosis

Differential diagnosis and visualisation of kidney diseases using supervised UMAP

Language: Jupyter Notebook - Size: 2.44 MB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

FdK-Stuttgart/Associations

Custom-tailored uMap alternative

Language: TypeScript - Size: 5.11 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

mohammad95labbaf/UMAP_breast_cancer

This repository explores the interplay between dimensionality reduction techniques and classification algorithms in the realm of breast cancer diagnosis. Leveraging the Breast Cancer Wisconsin dataset, it assesses the impact of various methods, including PCA, Kernel PCA, LLE, UMAP, and Supervised UMAP, on the performance of a Decision Tree.

Language: Jupyter Notebook - Size: 2.69 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

ArtemKornev0/Classification-task.-Based-Occupancy-Estimation-Using-Multivariate-Sensor-Nodes-

Задача классификации (Оценка занятости помещения на основе многомерных сенсорных узлов) / Classification task. (Based Occupancy Estimation Using Multivariate Sensor Nodes)

Language: Jupyter Notebook - Size: 3.13 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

nredell/RARI

A python package which implements a distance-based extension of the adjusted Rand index for the supervised validation of 2 cluster analysis solutions

Language: Python - Size: 368 KB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0

humitos/osm-pois

Show POIs from OSM in a map using OverpassAPI

Language: JavaScript - Size: 1020 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 22 - Forks: 21

srsawant34/G26_P7-Document_Clustering_Summarization_Visualization

Document Clustering, Summarisation and Visualisation on 20NewsGroup

Language: Jupyter Notebook - Size: 165 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 1

nunososorio/Reduce.Streamlit.App

This application provides an interactive visualization of dimensionality reduction techniques applied to a 2D and 3D demo datasets. The dimensionality reduction methods used in this application are PCA, t-SNE, and UMAP. This application is for educational purposes.

Language: Python - Size: 42 KB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

mingo514/PCA_explainability_Paper---MATH60629A_MACHINE_LEARNING_I

This project aims to enhance the interpretability of Principal Component Analysis (PCA) by integrating explainability tools and advanced dimensionality reduction techniques such as UMAP or t-SNE.

Language: Jupyter Notebook - Size: 10.1 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

snakers4/playing_with_vae

Comparing FC VAE / FCN VAE / PCA / UMAP on MNIST / FMNIST

Language: Jupyter Notebook - Size: 4.48 MB - Last synced: 3 months ago - Pushed: almost 6 years ago - Stars: 59 - Forks: 12

AjNavneet/GraphRecommender_FAISS_ECommerce

Graph based recommender system using FAISS for e-commerce depending on purchase and search history.

Language: Jupyter Notebook - Size: 767 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

GwangWooKim/saVAE

A similarity-assisted variational autoencoder (saVAE) is a new method that adopts similarity information in the framework of the VAE.

Language: Python - Size: 1.7 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

TAPE-Lab/CyGNAL

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

Language: Python - Size: 50.1 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 6 - Forks: 7

colurw/beerBot

Recommender system predicting user beer preferences.

Language: Python - Size: 14.8 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

annm802/tech-and-the-economic-cycle

Using BERTopic to show the path of technological advancements in the different phases of the economic cycle (January 2005- January 2023).

Language: Jupyter Notebook - Size: 83.3 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

Jeffery-Ni/AANuVis

A semi-automatic amino acid usage and di- and tetra-nucleotide usage frequency calculator and UMAP visualizer

Language: Python - Size: 57.6 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

timsainb/ParametricUMAP_paper

Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised learning" (Sainburg, McInnes, Gentner, 2020).

Language: Jupyter Notebook - Size: 1.42 GB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 138 - Forks: 15

fcole90/interactive_bayesian_optimization

ACM UMAP 2020 - Human Strategic Steering Improves Performance of Interactive Optimization

Language: TypeScript - Size: 2.19 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 4 - Forks: 0

robmarkcole/umap-image-embedding-streamlit-app

App to explore umap image embeddings for MNIST class datasets

Language: Jupyter Notebook - Size: 12.1 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

dlab-berkeley/Unsupervised-Learning-in-R

Workshop (6 hours): Clustering (Hdbscan, LCA, Hopach), dimension reduction (UMAP, GLRM), and anomaly detection (isolation forests).

Language: R - Size: 472 KB - Last synced: 2 months ago - Pushed: almost 4 years ago - Stars: 44 - Forks: 12

Ala-Eddine-BOUDEMIA/Chromatin-Dynamics

Integrated Analysis of Co-expression Patterns of Histone Variants and their Chaperones Across Tissues from Publicly Available RNA-Seq Data

Language: HTML - Size: 3.65 GB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

dev-ev/prot-rna-umap-clustering

Joint UMAP embedding and clustering of proteomic and transcriptomic data

Language: HTML - Size: 4.42 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0

alvaro-concha/animal-behavior-analysis

animal-behavior-analysis is a Python repository to analyze animal behavior in an unsupervised fashion. It uses UMAP dimensionality reduction and watershed segmentation to classify preprocessed animal behavior data obtained from video-tracking animal body parts with LEAP or DeepLabCut.

Language: Jupyter Notebook - Size: 8.37 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0