Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: lc-ms
CNIC-Proteomics/TurboPutative-web
Language: HTML - Size: 231 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 0 - Forks: 0
jorainer/xcmsTutorials
Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package
Language: TeX - Size: 33.7 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 5 - Forks: 1
computational-metabolomics/msPurity
R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Language: HTML - Size: 12.8 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 15 - Forks: 3
computational-metabolomics/structToolbox
R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox
Language: R - Size: 24.7 MB - Last synced: 14 days ago - Pushed: 3 months ago - Stars: 8 - Forks: 4
toscm/FastRet
FastRet, a R package for fast and simple Retention time prediciton in Liquid Chromotatography (Copied from https://github.com/ChristianAmes/FastRet)
Language: R - Size: 4.12 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
xieguigang/mzkit
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
Language: Visual Basic .NET - Size: 487 MB - Last synced: 29 days ago - Pushed: about 1 month ago - Stars: 44 - Forks: 14
ethanbass/mzinspectr
Load and analyze MS-DIAL alignment files in R for analysis of mass spectrometry data.
Language: R - Size: 160 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0
AutoFlowResearch/SmartPeak
Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing
Language: C++ - Size: 203 MB - Last synced: 29 days ago - Pushed: about 1 year ago - Stars: 39 - Forks: 13
jbellamycarter/pepfoot
PepFoot: a user friendly GUI for protein footprinting analysis
Language: Python - Size: 3.06 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 6 - Forks: 2
rformassspectrometry/metaRbolomics-book
The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
Language: TeX - Size: 82.7 MB - Last synced: 7 days ago - Pushed: about 3 years ago - Stars: 32 - Forks: 10
BioDeep/metabolomics-report-standards
Metabolomics Feature Identification Report Industry Standards from BioNovoGene Corporation
Size: 25.9 MB - Last synced: 29 days ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1
computational-metabolomics/struct
R/Bioconductor package - STRUCT: STatistics in R Using Class Templates
Language: R - Size: 1.19 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 5 - Forks: 0
computational-metabolomics/beamspy-galaxy
Galaxy tools for BEAMSpy: Birmingham mEtabolite Annotation for Mass SpectroMetry (Python Package)
Language: Python - Size: 1.1 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 2 - Forks: 2
computational-metabolomics/beamspy
BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
Language: Python - Size: 76.7 MB - Last synced: 6 days ago - Pushed: about 1 year ago - Stars: 15 - Forks: 5
workflow4metabolomics/camera.archive π¦
π« move to https://github.com/workflow4metabolomics/tools-metabolomics
Language: R - Size: 94.7 MB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 1
workflow4metabolomics/workflow4metabolomics
Workflow4Metabolomics meta repository
Language: HTML - Size: 12.5 MB - Last synced: 26 days ago - Pushed: over 2 years ago - Stars: 10 - Forks: 4
computational-metabolomics/pmp
R/Bioconductor package - Peak Matrix Processing and signal batch correction for metabolomics data sets
Language: R - Size: 3.7 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 1
Waddlessss/metabengine
Ion-identity-informed metabolomics data processing
Language: Python - Size: 1.91 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 1
ybinjun/CRISP-DIA
CRISP-DIA is a software for liquid chromatography-tandem mass spectrometry (LC-MS/MS) based proteomics data processing, which enables accurate and reliable quantification for data-independent acquisition (DIA) proteomics.
Size: 75.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
SysMedOs/StarCats
epilipidomics tools for Lipostar 2 developed by Team SysMedOs
Size: 98.6 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
novak-jiri/cyclobranch
A tool for mass spectrometry data analysis.
Language: C++ - Size: 5.27 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 7 - Forks: 3
ElucidataInc/ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
Language: C++ - Size: 643 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 84 - Forks: 48
computational-metabolomics/metabolomicsWorkbenchR
R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API
Language: R - Size: 5.01 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 5 - Forks: 1
mjr129/metaboclust
β ππππ ππ π ππππππ ππ πππ ππππ ππππππππππ ππ πππππππππ β ππππ ππππ ππ πππ πππππππππ β ππππππ πππ πππ πππππππππ ππππ π ππ πππ ππππππ πππππππ
Language: C# - Size: 7.95 MB - Last synced: 7 months ago - Pushed: over 6 years ago - Stars: 3 - Forks: 2
SLINGhub/StratiRandom
R script and Shiny app to perform stratified randomisation
Language: R - Size: 95.7 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0
zmzhang/pymass
Package for analyzing MS with Python
Language: C - Size: 133 KB - Last synced: 9 months ago - Pushed: over 6 years ago - Stars: 9 - Forks: 5
computational-metabolomics/structReport
R/Bioconductor package - STRUCT report
Language: R - Size: 44.9 KB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
computational-metabolomics/sbcms π¦
:warning: :no_entry_sign: [DEPRECATED] see README for more details.
Language: HTML - Size: 2.5 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1
YonghuiDong/Miso
R package for Multi-isotope Labeling for Metabolomics Analysis
Language: R - Size: 6.4 MB - Last synced: 9 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 1
LizzyParkerPannell/Untargeted_metabolomics_workflow
Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463
Language: R - Size: 67.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 3
chhh/batmass
Mass spectrometry data visualization
Language: Java - Size: 53.2 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 34 - Forks: 8
YogiOnBioinformatics/Computational-Drug-Discovery-Internship-at-Merck
Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging to Merck & Co.
Language: Python - Size: 293 KB - Last synced: 15 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 2
computational-metabolomics/mspurity-galaxy
Galaxy tools for msPurity package: includes precursor ion purity calculations and spectral matching
Language: R - Size: 73.4 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 6
Noldyman/chemprove
Website with utilities for organic chemists.
Language: TypeScript - Size: 2 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1
MolecularCartography/Optimus
Workflow for LC-MS feature analysis and spatial mapping
Language: Python - Size: 118 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 17 - Forks: 12
hcji/AutoMS
Deep Denoising Autoencoder-assisted Continuous Scoring of Peak Quality in High-Resolution LCβMS Data
Language: Jupyter Notebook - Size: 23.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1
MolecularCartography/OptimusViewer
An app for visualizing LC-MS features detected with Optimus workflow
Language: JavaScript - Size: 92.2 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 4 - Forks: 3
ajgiuliani/MSj.jl
A mass spectrometry package for Julia
Language: Julia - Size: 9.07 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 0
Khrameeva-Lab/lipidomics_analysis_2021 π¦
The Hitchhikerβs Guide to untargeted lipidomics analysis: Practical guidelines
Language: R - Size: 2.95 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
chhh/MSFTBX
MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)
Language: Java - Size: 49.4 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 11 - Forks: 4
SysMedOs/lipidhunter
LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.
Language: Python - Size: 32.6 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 7 - Forks: 6
stanstrup/QC4Metabolomics
QC systems for metabolomics studies
Language: R - Size: 347 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 7 - Forks: 0
sajfb/Isotopic-Profile-Deconvolution-Chromatogram-IPDC-algorithm
The IPDC algorithm was developed to screen for a wide variety of organic compounds in high-resolution mass spectrometry (HRMS) data acquired from instruments with resolution power as low as 22β―000 fwhm.
Language: MATLAB - Size: 993 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
CNIC-Proteomics/TurboPutative
Application for the handling and simplification of putative annotations in untargeted metabolomics analysis based on LC/ESI-MS
Language: Python - Size: 113 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
margotbligh/Dulce
R package for annotation of glycans in MS1 and MS2 data
Language: R - Size: 62.5 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0
SysMedOs/AdipoAtlasScripts
Python & R scripts collection for AdipoAtlas project
Language: Python - Size: 14.9 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
JamesJeffryes/taxaspec
Acquire & filter mass spectral libraries based on sample taxonomy
Language: Python - Size: 63.3 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0
gabrielctn/phnmnl_IPO_workflow
Optimize XCMS analytical parameters by running IPO workflow (Peak picking + Retention time correction and grouping optimization) on Metabolights studies within the PhenoMeNal EU project.
Language: R - Size: 261 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0
alexandrovteam/MassFuser
Size: 66.4 KB - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 2
workflow4metabolomics/probmetab
ProbMetab For Galaxy
Language: R - Size: 14.1 MB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
alexandrovteam/MRMConvert
Workflow for generating regular LC-MS data from the ones acquired in MRM mode
Size: 22.5 KB - Last synced: about 1 month ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0