mobiusklein/ms_deisotope

A library for deisotoping and charge state deconvolution of complex mass spectra

Language: Python - Size: 143 MB - Last synced: 7 days ago - Pushed: about 1 month ago - Stars: 30 - Forks: 14

mobiusklein/psims

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

Language: Python - Size: 214 MB - Last synced: 6 days ago - Pushed: 3 months ago - Stars: 19 - Forks: 9

ursgal/ursgal

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

Language: Python - Size: 13.1 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 41 - Forks: 32

idslme/IDSL.MXP

A light weight and fast parser for reading mzML, mzXML and netCDF data files

Language: R - Size: 199 KB - Last synced: 8 days ago - Pushed: about 1 year ago - Stars: 5 - Forks: 0

yufree/mzrtsim

Raw data and peaks list simulation for GC/LC-MS based data

Language: R - Size: 36.4 MB - Last synced: 19 days ago - Pushed: about 2 months ago - Stars: 4 - Forks: 1

computational-metabolomics/dimspy

Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

Language: Python - Size: 107 MB - Last synced: 16 days ago - Pushed: 10 months ago - Stars: 18 - Forks: 10

mobiusklein/mzdata

Language: Rust - Size: 35.9 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 9 - Forks: 1

PNNL-Comp-Mass-Spec/Thermo-FAIMS-to-MzML

Converts a Thermo .raw file with FAIMS scans into a series of .mzML files, creating one .mzML file for each FAIMS compensation voltage (CV) value.

Language: C# - Size: 6.58 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 0

PNNL-Comp-Mass-Spec/Informed-Proteomics

Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

Language: C# - Size: 107 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 29 - Forks: 8

novak-jiri/cyclobranch

A tool for mass spectrometry data analysis.

Language: C++ - Size: 5.27 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 7 - Forks: 3

PNNL-Comp-Mass-Spec/PSI-Interface

C# reader/writer for mzIdentML files (.mzID). Also supports reading mzML files.

Language: C# - Size: 12.6 MB - Last synced: 24 days ago - Pushed: about 2 months ago - Stars: 4 - Forks: 3

wilsontom/slurmwiz

Convert Mass Spectrometry Files using msconvert, singularity and SLURM

Language: R - Size: 12.7 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

xxao/msread

Read popular mass spectrometry formats

Language: Python - Size: 28.3 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 5 - Forks: 1

chhh/batmass

Mass spectrometry data visualization

Language: Java - Size: 53.2 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 34 - Forks: 8

524D/mzrecal

Recalibrate Mass Spectrometry data in mzML format

Language: Go - Size: 6.22 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 6 - Forks: 0

sgibb/MALDIquantForeign

Import/Export routines for MALDIquant

Language: R - Size: 402 KB - Last synced: 6 days ago - Pushed: 4 months ago - Stars: 9 - Forks: 4

chhh/MSFTBX

MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)

Language: Java - Size: 49.4 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 11 - Forks: 4

wilsontom/msconverteR

Create .mzML files through the R Console

Language: R - Size: 16.9 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 10 - Forks: 3

wilsontom/q3ML

Selective Reaction Monitoring (SRM) Mass Spectrometry (MS) mzML Parser

Language: R - Size: 2.31 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

AlanRace/jimzMLParser

Java imzML (mass spectrometry imaging) and mzML (mass spectrometry) parser

Language: Java - Size: 10.4 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 4 - Forks: 4

ajmaurais/scanSelect

Select specified scans and precursors from a mzML file

Language: Python - Size: 20.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

ajmaurais/pymsConvert

Convert between common MS data formats.

Language: Python - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0