GitHub topics: openms
OpenMS/OpenMS
The codebase of the OpenMS project
Language: C++ - Size: 765 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 524 - Forks: 360
OpenMS/pyopenms-docs
pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
Language: Python - Size: 51.8 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 49 - Forks: 70
bigbio/sdrf-pipelines
`sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files
Language: Python - Size: 91.6 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 20 - Forks: 25
cbielow/PTXQC
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Language: HTML - Size: 16.7 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 46 - Forks: 26
nf-core/mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Language: Nextflow - Size: 26.1 MB - Last synced at: 1 day ago - Pushed at: about 1 month ago - Stars: 38 - Forks: 29
nf-core/proteomicslfq
Proteomics label-free quantification (LFQ) analysis pipeline
Language: Nextflow - Size: 3.59 MB - Last synced at: 1 day ago - Pushed at: 8 months ago - Stars: 35 - Forks: 21
saezlab/lipyd
Python module for lipidomics LC MS/MS data analysis
Language: Python - Size: 17.9 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 17 - Forks: 3
p2m2/service-flask-thermorawfileparser-openms
A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.
Language: Python - Size: 29.3 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
nf-core/diaproteomics
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
Language: Nextflow - Size: 4.06 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 11
nf-core/quantms 📦
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Language: Nextflow - Size: 21.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 26 - Forks: 28
glyXera/glyXtoolMS
🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data
Language: Python - Size: 22.5 MB - Last synced at: 4 months ago - Pushed at: almost 7 years ago - Stars: 6 - Forks: 0
proteomicsunitcrg/QCloud
A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.
Language: Java - Size: 33 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0
ajmaurais/scanSelect
Select specified scans and precursors from a mzML file
Language: Python - Size: 20.5 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
ajmaurais/pymsConvert
Convert between common MS data formats.
Language: Python - Size: 13.7 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0