GitHub topics: tmt
oirlab/liger_iris_pipeline
Data Reduction System (DRS) for the Thirty Meter Telescope IRIS imager/spectrograph
Language: Python - Size: 3.45 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 1 - Forks: 4
bigbio/quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Language: Nextflow - Size: 25 MB - Last synced at: 1 day ago - Pushed at: 13 days ago - Stars: 56 - Forks: 45
Fexcraft/FMT
Fex's Modelling Toolbox
Language: Java - Size: 24.7 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 18 - Forks: 7
MannLabs/alphaquant
An open-source Python package for accurate and sensitive peptide and protein quantification.
Language: Python - Size: 595 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 18 - Forks: 1
Vitek-Lab/MSstatsTMT
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
Language: R - Size: 61.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 29 - Forks: 15
pwilmart/PAW_pipeline
A Comet-based, best practices proteomics pipeline.
Language: Python - Size: 97 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 37 - Forks: 7
qzhang503/mzion
Proteomics database searches
Language: R - Size: 7.27 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
pwilmart/IRS_normalization
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
Language: Jupyter Notebook - Size: 32.1 MB - Last synced at: 5 months ago - Pushed at: about 6 years ago - Stars: 16 - Forks: 9
fedora-ci/generic-tests 📦
Generic Fedora CI tests FMF defintions
Language: Dockerfile - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
nf-core/quantms 📦
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Language: Nextflow - Size: 21.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 26 - Forks: 28
pwilmart/TMT_analysis_examples
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
Size: 185 MB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 21 - Forks: 4
pwilmart/IRS_validation
Analysis of technical replicate channels to more fully validate the internal reference scaling (IRS) method.
Language: Jupyter Notebook - Size: 4.9 MB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0
pwilmart/SPS-MS3_vs_MS2_TMT
Comparison of SPS MS3 TMT data to MS2 TMT data
Language: HTML - Size: 13 MB - Last synced at: 16 days ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
pwilmart/Yeast_CarbonSources
Yeast TMT data - 3 different carbon sources (from Gygi lab) analyzed with PAW pipeline and MaxQuant
Language: Jupyter Notebook - Size: 40.9 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
pwilmart/Multiple_TMT_MQ
Developing mouse lens done with MQ
Language: HTML - Size: 2.74 MB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
proteomicsyates/CensusTMT2MSstatsTMT
Converter from Census TMT output file to the input of MSstatsTMT
Language: Java - Size: 247 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1
pwilmart/MaxQuant_and_PAW
Compares PAW and MQ for a 7-channel TMT experiment; compares edgeR to two-sample t-test
Language: HTML - Size: 46.7 MB - Last synced at: 6 months ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1
pwilmart/JPR-201712_MS2-MS3
Public TMT data comparing MS2 to MS3 methods
Language: Jupyter Notebook - Size: 52 MB - Last synced at: 5 days ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
pwilmart/Plubell_2017_PAW
Data from Plubell et al., 2017 processed with the PAW pipeline.
Language: Jupyter Notebook - Size: 11.1 MB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
pwilmart/BCP-ALL_QE-TMT_Nat-Comm-2019
Re-analysis of data from childhood acute lymphoblastic leukemia study in Nat. Comm. April 2019
Language: HTML - Size: 162 MB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
pwilmart/Yeast_triple_KO_TMT
R analysis of TMT data from Yeast triple knockout strains (Paulo et al., 2016, JASMS, v27, p1620-25)
Language: Jupyter Notebook - Size: 12.2 MB - Last synced at: 6 months ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
pwilmart/Dilution_series
Tandem Mass Tag (TMT) dilution series analysis
Language: Jupyter Notebook - Size: 10.8 MB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0