Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: exposome

Repositories

idslme/IDSL.IPA

Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

Language: R - Size: 17.1 MB - Last synced: 25 days ago - Pushed: 12 months ago - Stars: 14 - Forks: 1

idslme/IDSL.MXP

A light weight and fast parser for reading mzML, mzXML and netCDF data files

Language: R - Size: 199 KB - Last synced: 17 days ago - Pushed: about 1 year ago - Stars: 5 - Forks: 0

idslme/IDSL.UFA

United Formula Annotation (UFA) for LC-HRMS data

Language: R - Size: 3.17 MB - Last synced: 26 days ago - Pushed: 12 months ago - Stars: 7 - Forks: 1

Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.

Language: R - Size: 10.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 4 - Forks: 0

idslme/CCDB

Chemical Correlation Database (CCDB)

Language: R - Size: 7.82 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 0

tomszar/PheEWAS_sexdiff

Phenome-wide sex differences in environmental effects in NHANES

Language: Jupyter Notebook - Size: 13.2 MB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

scannotation/Scannotation_software

Scannotation is an automated and user-friendly suspect screening tool for the rapid pre-annotation of LC-HRMS datasets. This software combines several MS1 chemical predictors: m/z, retention times, isotopic patterns and neutral loss patterns, to score the proximity between features and suspects, thus efficiently prioritizing compounds of interest.

Size: 273 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 1