Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: omics

Asa12138/pctax

Professional Comprehensive Omics Data Analysis

Language: R - Size: 11.1 MB - Last synced: about 20 hours ago - Pushed: about 21 hours ago - Stars: 3 - Forks: 1

moritzmadern/Simple_MetaStudy

R script to perform simple meta analysis on multiple individually curated bioinformatics datasets

Size: 8.99 MB - Last synced: about 22 hours ago - Pushed: about 23 hours ago - Stars: 0 - Forks: 0

aws-samples/amazon-omics-webapp-integrations

This project contains the webapp sample integrated with Amazon Omics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.

Language: Vue - Size: 4.08 MB - Last synced: about 8 hours ago - Pushed: 1 day ago - Stars: 10 - Forks: 1

fgcz/bfabricShiny

Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data

Language: R - Size: 1.27 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 8 - Forks: 1

abbvie-external/OmicNavigator

Open-Source Software for Omic Data Analysis and Visualization

Language: R - Size: 56.6 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 28 - Forks: 8

bigomics/omicsplayground

Visual self-service analytics platform for big omics data.

Language: R - Size: 1.15 GB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 113 - Forks: 34

sdsc-ordes/modo-schema

Metadata schema for the SMOC Multi-Omics Digital-Object

Language: Python - Size: 995 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 0 - Forks: 0

cafferychen777/MicrobiomeStat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Language: R - Size: 15.6 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 24 - Forks: 3

MannLabs/OmicLearn Fork of OmicEra/OmicLearn

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

Language: Python - Size: 22.2 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 28 - Forks: 6

Aavache/awesome-genetic-ai-papers

Recent awesome AI papers about genomics.

Size: 9.77 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

cafferychen777/MicrobiomeStat-Turtorial-Professional-Version

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

Size: 176 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 2 - Forks: 2

YogiOnBioinformatics/Joint-Genotyping-2021-2022

Joint Genotyping in MIT Fraenkel Lab with ALS Genomics + 1000 Genomes Data

Language: Jupyter Notebook - Size: 646 KB - Last synced: 6 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

a-r-j/TB-Resources

List of online databases and resources for Mycobacterium Tuberculosis

Size: 10.7 KB - Last synced: 6 days ago - Pushed: about 5 years ago - Stars: 1 - Forks: 1

DNAstack/dnastack-client

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

Language: Python - Size: 346 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

theGreatHerrLebert/rustims

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

Language: Rust - Size: 36.9 MB - Last synced: about 23 hours ago - Pushed: about 24 hours ago - Stars: 4 - Forks: 1

PengBingming/idbview

A database and interactive platform for respiratory-associated disease.

Language: R - Size: 82 MB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 0

saramasarone/enrich_omics

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

Language: Python - Size: 3.18 MB - Last synced: 3 days ago - Pushed: 2 months ago - Stars: 17 - Forks: 0

2n3m/2n3m

Biomedicine, Pharma, Life Science, IT Consulting

Size: 68.4 KB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0

ginkgobioworks/geckopy

Enzyme-constrained genome-scale models in python

Language: Python - Size: 4.84 MB - Last synced: 6 days ago - Pushed: 7 months ago - Stars: 23 - Forks: 4

folkehelseinstituttet/GWAS 📦

GWAS functionality

Language: R - Size: 51.8 KB - Last synced: 14 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

pachterlab/voyager

From geospatial to spatial -omics

Language: R - Size: 4.1 GB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 60 - Forks: 6

rajewsky-lab/openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

Language: HTML - Size: 170 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 25 - Forks: 7

yutayamate/functree-cli

Command line interface for FuncTree (Deprecated, Experimental)

Language: JavaScript - Size: 1.79 MB - Last synced: 20 days ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

sdsc-ordes/modo-api

Python API to manage multi-omics digital objects

Language: Python - Size: 736 KB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 0 - Forks: 0

futianfan/GenoCraft

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Language: SCSS - Size: 68.2 MB - Last synced: 7 days ago - Pushed: 20 days ago - Stars: 13 - Forks: 0

fraenkel-lab/OmicsIntegrator2

Prize-Collecting Steiner Forests for Interactomes

Language: Jupyter Notebook - Size: 39.8 MB - Last synced: 6 days ago - Pushed: 3 months ago - Stars: 51 - Forks: 24

maxplanck-ie/Rseurat

Single Cell RNA-seq Course

Language: R - Size: 17.2 MB - Last synced: 29 days ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

saezlab/FUNKI

FUNctional analysis worKflows Interface

Language: Python - Size: 13 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 3 - Forks: 1

cran-task-views/Omics

CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Size: 72.3 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 15 - Forks: 4

1feres1/pynmranalysis

A Python Toolbox for preprocessing and analysing NMR data

Language: Jupyter Notebook - Size: 7.18 MB - Last synced: 21 days ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1

shenwanxiang/bidd-aggmap

Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool

Language: Jupyter Notebook - Size: 871 MB - Last synced: 5 days ago - Pushed: about 1 month ago - Stars: 33 - Forks: 5

Tiago-Minuzzi/HamleTE

Find and classify transposable elements using convolutional neural networks.

Language: Python - Size: 167 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

kstawiski/OmicSelector

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Language: R - Size: 54.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 30 - Forks: 3

ursgal/ursgal

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

Language: Python - Size: 13.1 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 41 - Forks: 32

omicsEye/massSight

An R package for the alignment and scaling of LC-MS metabolomics data

Language: R - Size: 13.5 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 2 - Forks: 0

jpquast/protti

Picotti lab data analysis package.

Language: R - Size: 37.6 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 54 - Forks: 5

snail123815/oleveler

This is mirror repository of https://gitlab.services.universiteitleiden.nl/duc/oleveler

Language: Python - Size: 10.8 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

EBI-Metagenomics/holofood-database

HoloFood is a project investigating sustainable food production through hologenomics. This Django app is the data portal where samples and other datasets from the project are made publicly available.

Language: Python - Size: 20.3 MB - Last synced: 23 days ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

cwieder/py-ssPA

Single sample pathway analysis tools for omics data

Language: Jupyter Notebook - Size: 8.05 MB - Last synced: 2 days ago - Pushed: about 1 month ago - Stars: 9 - Forks: 4

perrin-isir/xomx

a python library providing data processing and machine learning tools for computational omics, with emphasis on explainability

Language: Python - Size: 13.4 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 5 - Forks: 3

krassowski/multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

Language: Jupyter Notebook - Size: 16.6 MB - Last synced: 25 days ago - Pushed: 10 months ago - Stars: 23 - Forks: 10

tbcgit/omdctk

OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.

Language: Python - Size: 7.73 MB - Last synced: 17 days ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

huangwb8/GSClassifier

A comprehensive classification tool based on pure transcriptomics for precision medicine

Language: R - Size: 32.2 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 1

KatrionaGoldmann/volcano3D

An R package to plot interactive three-way differential expression analysis

Language: HTML - Size: 219 MB - Last synced: 5 days ago - Pushed: 9 months ago - Stars: 31 - Forks: 7

hsaxe/Omics-Analyst

R package to facilitate omics analyses

Language: R - Size: 50.8 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

biocore/gneiss

compositional data analysis toolbox

Language: Jupyter Notebook - Size: 32.8 MB - Last synced: 19 days ago - Pushed: over 1 year ago - Stars: 54 - Forks: 27

awakenedhaki/weaver

Gene set enrichment network visualization

Language: R - Size: 30.3 KB - Last synced: 3 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

leandrotiburske/BipolarDisorder

Transcriptome analysis from patients with Bipolar Affective Disorder

Language: R - Size: 68.4 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

YuanLabZJU/crca-proteome

Code scripts for ’Prediction of overall survival in stage II and III Colon Cancer through Machine Learning of Rapidly-acquired Proteomics‘

Language: R - Size: 4.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

traincheckai/mojomics

Supercharging bioinformaticians with🔥

Language: Jupyter Notebook - Size: 13.7 KB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 10 - Forks: 2

tubanlee/MD

Matrix dissimilarity from the differences of Moments and sparsity

Language: R - Size: 2.42 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 56 - Forks: 3

transbioZI/BioMM

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

Language: HTML - Size: 12.2 MB - Last synced: 15 days ago - Pushed: over 1 year ago - Stars: 14 - Forks: 1

DEMENT-Model/DEMENTpy

A spatially explicit trait- and individual-based microbial systems modelling framework

Language: Python - Size: 29.3 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 13 - Forks: 4

santorsola-teaching/class-lab-adv-omics-2023

Repository for the Course "Laboratory of Advanced Bioinformatics for Omics Sciences", in the Curriculum "Molecular and Digital Biology" of the M.Sc. Molecular Biology and Genetics, University of Pavia

Language: HTML - Size: 296 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

Maximvan/AHTAOmicsAnalysisPCOS

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

Size: 24.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

flowhub-team/awesome-omics

A collection of awesome things regarding all omics.

Size: 123 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 535 - Forks: 61

dandycodingpipe/pubAssociationFinder

Bioinformatics, Omics, NLP : Masters 1st year internship project

Language: R - Size: 7.1 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

Starlitnightly/omicverse

A python library for multi omics included bulk and single cell RNA-seq analysis.

Language: Jupyter Notebook - Size: 604 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 133 - Forks: 20

nunososorio/Reduce.Streamlit.App

This application provides an interactive visualization of dimensionality reduction techniques applied to a 2D and 3D demo datasets. The dimensionality reduction methods used in this application are PCA, t-SNE, and UMAP. This application is for educational purposes.

Language: Python - Size: 42 KB - Last synced: 3 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

delosh653/ECHO

An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators.

Language: R - Size: 6.86 MB - Last synced: 3 months ago - Pushed: almost 4 years ago - Stars: 12 - Forks: 0

saifeldeen-bio/MultiOmics

MOFA (Multi-Omics Factor Analysis) is a computational framework and statistical method designed for the integration and analysis of multi-omics data.

Language: R - Size: 4.88 KB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

ddiez/ngstools

Miscellaneous tools for the analysis of NGS data

Language: R - Size: 456 KB - Last synced: 5 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

ddiez/motiftools

Tools for the analysis of motifs

Language: R - Size: 1.68 MB - Last synced: 5 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

ddiez/q3tools

Custom functions for the analysis of omics data

Language: R - Size: 4.45 MB - Last synced: 5 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

scverse/Muon.jl

Muon for Julia

Language: Julia - Size: 895 KB - Last synced: 28 days ago - Pushed: about 2 months ago - Stars: 25 - Forks: 5

BiomedSciAI/Geno4SD

An python omics data toolkit for the analysis across biological scales

Language: Jupyter Notebook - Size: 78.1 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 6 - Forks: 1

f6v/AHTA_project

AHTA course project

Language: Shell - Size: 464 KB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

K2SOHIGH/MOOSE

MOOSE : MetaOmics and Omics SuitE

Language: Python - Size: 356 KB - Last synced: 3 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 1

YogiOnBioinformatics/Differential-Gene-Expression-Analysis-with-Machine-Learning-Using-Dexamethasone-Treatment-Data

Worked with fellow peers at University of Pittsburgh under supervision of Dr. Junshu Bao, Department of Statistics, University of Pittsburgh, to do a Differential Gene Expression Analysis on a Dexamethasone treatment data set and incorporated Machine Learning into project.

Language: R - Size: 400 KB - Last synced: 6 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 2

breimanntools/xomics

Python framework for explainable omics analysis

Language: Jupyter Notebook - Size: 16.8 MB - Last synced: 24 days ago - Pushed: 3 months ago - Stars: 5 - Forks: 0

BIMSBbioinfo/deconvR

The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

Language: R - Size: 39.8 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 10 - Forks: 3

dmpio/omin

Omics Modeling Integration and Normalization

Language: Python - Size: 118 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

amarinderthind/decontaminer

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x

Language: Perl - Size: 1.44 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 6 - Forks: 0

gmiaslab/pyiomica

PyIOmica (pyiomica) is a Python package for omics analyses.

Language: Python - Size: 451 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 15 - Forks: 5

JacobAgerbo/JAR.github.io

My Academic webpage

Language: CSS - Size: 52.6 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 1

hujingshuang/MTrans

Multi-source Translation

Language: Java - Size: 630 KB - Last synced: 7 months ago - Pushed: almost 5 years ago - Stars: 793 - Forks: 214

pmb59/sc-lymphomagenesis

Single-cell atlas of lymphoma evolution

Language: Nextflow - Size: 47.9 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 1

idrblab/NOREVA

R Package for Systematic Optimization of Metabolomic Data Processing

Language: R - Size: 4.02 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 13 - Forks: 5

hagax8/drugtargetor

Backbone of Drug Targetor: a js web app for GWAS-based drug-target networks

Language: JavaScript - Size: 1.89 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 5 - Forks: 5

anwarMZ/CoMW

Comparative Metatranscriptomics Workflow

Language: Python - Size: 175 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 6 - Forks: 3

NCBI-Codeathons/OMOPOmics

Patient 'omics data in OMOP format

Language: HTML - Size: 35.5 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 8 - Forks: 2

marmarelis/QDiffusion.jl

Leveraging the full dimensionality of single-cell transcriptomics (among other things!)

Language: Julia - Size: 534 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ayushnoori/datalens

Open data analysis platform for Alzheimer's disease. Created for CS50 at Harvard College.

Language: HTML - Size: 5.87 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

lamanno-epfl/tomographer

The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7

Language: Jupyter Notebook - Size: 1.54 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 11 - Forks: 3

amitjavilaventura/plotmics

Visualize omics and sequencing data in R.

Language: R - Size: 54.9 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

mattfaltyn/mojomics Fork of traincheckai/mojomics

Supercharging bioinformaticians with 🔥

Language: Jupyter Notebook - Size: 13.7 KB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

shyammarjit/SAGA

SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data

Language: Jupyter Notebook - Size: 32.8 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 3 - Forks: 1

GCS-ZHN/socube

A simple python package for doublet detection in scRNA-seq data

Language: Python - Size: 4.37 MB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 7 - Forks: 5

KechrisLab/kechrislab.github.io

Kechris Homepage

Language: SCSS - Size: 23 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

JacobAgerbo/academicpages.github.io Fork of academicpages/academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

Language: JavaScript - Size: 64.5 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

mixOmicsTeam/mixOmics

Development repository for the Bioconductor package 'mixOmics '

Language: R - Size: 16.1 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 126 - Forks: 47

NhanNguyen000/RegOmics

This repository is the code source for the RegOmics tool - Regulatory extraction for Omics data.

Language: R - Size: 15.6 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

dfanidis/Fibromine

Language: R - Size: 55.2 MB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1

FerranC96/sKG4cellCommns

Yale Collab with Aarthi (Smita Krishnaswamy group) where I built signalling knowledge graphs to capture cell communications.

Language: Jupyter Notebook - Size: 222 MB - Last synced: 8 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

guhjy/TCGAome Fork of priesgo/TCGAome

Language: R - Size: 4.91 MB - Last synced: 9 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

guhjy/OmicsPLS Fork of selbouhaddani/OmicsPLS

R package for High dimensional data analysis and integration with O2PLS!

Language: R - Size: 30.6 MB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

guhjy/MIMOmicsData Fork of selbouhaddani/MIMOmicsData

R package to simulate two omics datasets

Language: R - Size: 265 KB - Last synced: 9 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

guhjy/mashr Fork of stephenslab/mashr

An R package for multivariate adaptive shrinkage.

Language: R - Size: 45.5 MB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

guhjy/GSEAMA Fork of dgrtwo/GSEAMA

Gene Set Enrichment Analysis Made Awesome

Language: R - Size: 463 KB - Last synced: 9 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

guhjy/GenomicSEM Fork of tbates/GenomicSEM

R-package for structural equation modeling based on GWAS summary data

Language: R - Size: 1.36 MB - Last synced: 9 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

Related Keywords
omics 174 bioinformatics 47 r 30 genomics 21 proteomics 20 transcriptomics 19 machine-learning 15 visualization 15 rna-seq 12 single-cell 10 r-package 9 python 9 omics-data-integration 9 multi-omics 8 metabolomics 8 ngs 7 data-analysis 7 microbiome 7 mass-spectrometry 6 computational-biology 6 data-integration 6 metagenomics 5 scrna-seq 5 data-science 5 gwas 5 snakemake 4 gene-expression 4 quality-control 4 systems-biology 4 integration 4 bioconductor 4 analysis 3 r-stats 3 reporting 3 rstats 3 pca 3 omics-data 3 heatmap 3 genome 3 genetics 3 dna 3 deep-learning 3 network 3 statistics 3 workflow 3 latent-variable-models 3 biomarker-discovery 3 protein 3 data-visualization 3 microbiome-workflow 3 drug-discovery 3 precision-medicine 3 geometric-deep-learning 3 biology 3 pathway-enrichment-analysis 3 deep-neural-networks 2 feature-selection 2 clustering 2 cran 2 drug-repurposing 2 enrichment-analysis 2 pathway-analysis 2 next-generation-sequencing 2 bulk-rna-seq 2 metadata 2 spatial-transcriptomics 2 spatial 2 eda 2 education 2 o2pls 2 pls 2 transcriptional-regulatory-network 2 bioinformatics-tool 2 website 2 software 2 cancer-genomics 2 chip-seq 2 differential-gene-expression 2 biostatistics 2 doublet-detection 2 microarray 2 bioconductor-package 2 spatial-data-analysis 2 metatranscriptomics 2 api 2 plsda 2 datasets 2 differential-expression 2 interactive 2 multiomics 2 gsea 2 mojo 2 fmri-analysis 2 data-management 2 dna-methylation 2 nextflow 2 networks 2 graph-neural-networks 2 bacteria 2 graph 2