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GitHub / rajewsky-lab / openst
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rajewsky-lab%2Fopenst
Stars: 25
Forks: 7
Open Issues: 7
License: other
Language: HTML
Repo Size: 170 MB
Dependencies:
28
Created: 8 months ago
Updated: 27 days ago
Last pushed: 28 days ago
Last synced: 28 days ago
Topics: bioinformatics, omics, spatial-transcriptomics, transcriptomics
Files
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Readme
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Dependencies
.github/workflows/docs.yml
actions
- actions/cache v3 composite
- actions/checkout v4 composite
- actions/setup-python v4 composite
Dockerfile
docker
- ubuntu 22.04 build
pyproject.toml
pypi
- anndata >=0.7.4
- cellpose >=2.2.3
- dask *
- dask-image *
- h5py >=3
- joblib *
- kornia >=0.7.0
- matplotlib >=3.4
- natsort *
- numpy >=1.17.0
- ome-zarr >=0.8.2
- opencv-python >=4.8.0.76
- pandas >=1.0
- pyqt5 ==5.15.9
- pyqt5-qt5 ==5.15.2
- pyqt5-sip ==12.12.2
- pyqtgraph >=0.13.3
- python ^3.8
- scikit-image ==0.19.3
- scikit-learn >=0.24
- scipy >=1.4
- tqdm *
- JRubics/poetry-publish v2.0 composite
- actions/checkout v3 composite