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GitHub / EBI-Metagenomics / holofood-database

HoloFood is a project investigating sustainable food production through hologenomics. This Django app is the data portal where samples and other datasets from the project are made publicly available.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/EBI-Metagenomics%2Fholofood-database

Stars: 1
Forks: 0
Open Issues: 1

License: apache-2.0
Language: Python
Repo Size: 20.3 MB
Dependencies: 39

Created: about 2 years ago
Updated: 2 months ago
Last pushed: 2 months ago
Last synced: about 1 month ago

Topics: metabolomics, metagenomics, omics, python

Files

Readme

Dependencies

requirements-aws.txt pypi

awsebcli ==3.20.3

requirements-dev.txt pypi

black ==22.6.0 development
django-debug-toolbar ==3.5.0 development
djlint ==1.7.0 development
pre-commit ==2.19.0 development
pytest ==7.1.2 development
pytest-cov ==3.0.0 development
pytest-django ==4.5.2 development
pytest-env ==0.6.2 development
pytest-html ==3.1.1 development
requests-mock ==1.9.3 development
selenium ==4.3.0 development
selenium-wire ==4.6.5 development

requirements-docs.txt pypi

jupyterlab ==3.4.4
matplotlib ==3.5.2
pandas ==1.4.3

requirements.txt pypi

django ==4.1
django-admin-inline-paginator ==0.3.0
django-compressor ==4.1
django-filter ==22.1
django-ninja ==0.17.0
django-sass-processor ==1.2.1
gunicorn ==20.1.0
libsass ==0.21.0
martor ==1.6.13
psycopg2-binary ==2.9.3
pydantic ==1.9.1
python-dotenv ==0.20.0
requests ==2.28.1
xsdata ==22.7

.github/workflows/docs.yml actions

actions/checkout v2 composite
quarto-dev/quarto-actions/publish v2 composite
quarto-dev/quarto-actions/setup v2 composite

.github/workflows/test.yml actions

actions/checkout v3 composite
actions/setup-python v3 composite
codecov/codecov-action v2 composite
nanasess/setup-chromedriver master composite

k8s/Dockerfile docker

python 3.11 build

k8s-hl/Dockerfile docker

python 3.11 build