Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: microbiome-workflow
cafferychen777/MicrobiomeStat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Language: R - Size: 15.7 MB - Last synced: about 3 hours ago - Pushed: 1 day ago - Stars: 24 - Forks: 3
grimmlab/MicrobiomeBestPracticeReview
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Language: Shell - Size: 13 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 101 - Forks: 36
cafferychen777/MicrobiomeStat-Turtorial-Professional-Version
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
Size: 176 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 2 - Forks: 2
AlexUmbach/AOViz
short-read amplicon data visualization suite
Language: R - Size: 11.5 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0
Brochado-Kith/microbiome_analysis
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
Language: R - Size: 1.34 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 3 - Forks: 0
TomC-93/Tree-Root-Microbiome-Project
The scripts contained in this repository relate directly to the work conducted by the Tree Root Microbiome Project (TRMP) led by Dr Steve Wakelin.
Language: HTML - Size: 1.63 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 1
cafferychen777/MicrobiomeStat-Shiny
A Shiny interface for the MicrobiomeStat R package, designed to facilitate analysis and visualization of microbiome data.
Language: R - Size: 1.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 1
anwarMZ/CoMW
Comparative Metatranscriptomics Workflow
Language: Python - Size: 175 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 6 - Forks: 3
jjcolgan/Bodke-Script
Modified dada2 script, used for master's thesis project. Takes fast2 files and outputs ASV table, taxonomy table, phylogenetic tree, and input files for PICRUSt2
Size: 3.91 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ahmedmoustafa/ALS
Analysis of the gut microbiome of Amyotrophic Lateral Sclerosis (ALS) patients using the DADA2 workflow
Language: Jupyter Notebook - Size: 3.62 MB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
natmurad/amplicon16S
Analysis for amplicon data
Language: Jupyter Notebook - Size: 134 KB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
biocorecrg/microbiome_procedures
Mothur procedures for 16S and ITS analysis
Language: R - Size: 124 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 3 - Forks: 6
mschemmel/corrnet
Scripts to convert correlation and p-value matrices to edge list and network
Language: Python - Size: 353 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0
glickmac/Microbiome_Demo
A repository containing a demo microbiome workflow for R and Python
Language: Jupyter Notebook - Size: 127 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
