GitHub topics: 16s-seq
cafferychen777/MicrobiomeStat-Turtorial-Professional-Version
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
Size: 178 MB - Last synced at: about 3 hours ago - Pushed at: about 4 hours ago - Stars: 5 - Forks: 2
Headonpillow/16S_analysis
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
Language: R - Size: 54.7 KB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 3 - Forks: 0
bodeolukolu/Qmatey
Quantitative metagenomic alignment and taxonomic exact-matching
Language: Shell - Size: 437 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 1
jmgs7/16S-SNAPP-py3 Fork of swiftbiosciences/16S-SNAPP-py3
16S SNAPP on Python 3 - version 2
Language: Python - Size: 256 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1
micom-dev/q2-micom
A Qiime plugin for MICOM.
Language: Python - Size: 67.6 MB - Last synced at: 10 days ago - Pushed at: about 2 months ago - Stars: 10 - Forks: 5
barbarahelena/vsearchpipeline
VSEARCH pipeline for ASV inference of 16S seq data
Language: Nextflow - Size: 27.4 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
aobermayer4/ComputationalGenomics
Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R
Language: R - Size: 3.01 MB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
Language: Python - Size: 6.06 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1
janklaszczyk/EzBioCloud-automation
Python script designed to streamline bioinformatics analysis and facilitate data extraction from EZBioCloud
Language: Python - Size: 6.93 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
Gibbons-Lab/isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
Language: Jupyter Notebook - Size: 245 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 7
mmpust/IPMN-repository
R session, R scripts, and additional resources accompanying the BMJ Gut paper
Language: R - Size: 424 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Gibbons-Lab/isb_course_2022
Materials and presentation for the 2022 ISB Microbiome course.
Language: Jupyter Notebook - Size: 258 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 23 - Forks: 8
BenoitPAIX/Dactylospongia_metachromia_microbiome
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
Language: R - Size: 1.19 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
vanessapino/AUMicrobio
AU microbiome molecular exploratory analyses for NSW
Language: R - Size: 17.6 KB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
TraxlerLab/BlodgettProject
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
Language: R - Size: 131 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
