GitHub topics: pathogens
tznurmin/TEA_curated_data
Curated data and source articles for microbial strains (Strain Tagger) and human microbial pathogens (Pathogen Identifier) datasets. Over 3,500 tagged entities from hundreds of full-length articles.
Size: 20.7 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 1 - Forks: 0
CDCgov/MicrobeTrace Fork of AABoyles/MicrobeTrace
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Language: TypeScript - Size: 140 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 92 - Forks: 41
usegalaxy-eu/PathoGFAIR
PathoGFAIR: Galaxy FAIR Workflows for Pathogen Detection and Samples Comparison
Language: Jupyter Notebook - Size: 69.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 3
sib-swiss/hugo-pathogens-portal
Hugo pathogens portal theme
Language: HTML - Size: 2.28 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
Julio92-C/hosMicro
An interactive and user-friendly web application to explore the hospital microbiome and genetic makeup
Language: R - Size: 1.98 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
AABoyles/MicrobeTrace
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Language: HTML - Size: 68.5 MB - Last synced at: 9 days ago - Pushed at: 7 months ago - Stars: 12 - Forks: 42
ncrna/PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Language: Python - Size: 59.5 MB - Last synced at: about 22 hours ago - Pushed at: over 1 year ago - Stars: 27 - Forks: 8
globalcitizen/2019-wuhan-coronavirus-data 📦
2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)
Language: PHP - Size: 454 MB - Last synced at: 5 months ago - Pushed at: about 5 years ago - Stars: 618 - Forks: 133
ShwetaNagre/MIP_ORACLE Fork of Nirmal2310/MIP_ORACLE
MIP_ORACLE: Identifies unique target regions with diagnostic significance in pathogens.
Language: Python - Size: 354 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
duncanberger/SM_VARIATION
Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni
Size: 73.2 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
pmoris/FiMAB-bioinformatics
E-course on bioinformatics for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)
Language: TeX - Size: 224 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 2
mattmar/dynamAedes
Model to simulate the population dynamics of four Aedes mosquito species.
Language: R - Size: 14.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 0
Camilo-Mora/Diseases
Systematic assessment of the impacts of climate change on human pathogenic diseases
Language: HTML - Size: 1.14 GB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 0
Gibbons-Lab/isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
Language: Jupyter Notebook - Size: 245 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 7
bacpop/mandrake
Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
Language: Python - Size: 20.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 34 - Forks: 2
cmmr/EsViritu
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Language: Shell - Size: 1.55 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
trypanosomatics/aprank
This is APRANK, an Antigenic Protein and Peptide Ranker.
Language: R - Size: 31.3 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 3
emdelponte/pyblastr
Tracking the movement of cereal blast caused by Pyricularia
Language: HTML - Size: 43.2 MB - Last synced at: 10 months ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1
akarazeev/LauzHack19
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
Language: Jupyter Notebook - Size: 187 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
ccdmb/PathoPore
PathoPore - Longer Sequences and NextFlow Faster Analysis
Language: Nextflow - Size: 27.9 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1
