Jumitti/TFinder

Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.

Language: Python - Size: 60.5 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 6 - Forks: 10

ratschlab/metagraph

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Language: C++ - Size: 73.2 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 86 - Forks: 14

Gagniuc/Sequence-Logos-using-logarithms

Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Language: HTML - Size: 44.9 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0

Gagniuc/Simple-JS-implementation-of-Objective-Digital-Stains

Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Language: HTML - Size: 125 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Sequence-Logo-relative-style-with-axes

Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Language: HTML - Size: 264 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0

Gagniuc/Sequence-Logo-block-style-with-axes

Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

Language: HTML - Size: 279 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Ordered-Sequence-Logo-based-on-existing-matrices

Ordered Sequence Logo based on existing matrices is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as html.

Language: HTML - Size: 53.7 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Objective-Digital-Stains-in-PHP

This code generates Objective Digital Stains (ODSs) and it is implemented in PHP. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Language: PHP - Size: 58.6 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Information-content-vs-percentage

This is a scanner that produces two types of signals. The two signals are calculated from the content of a sliding window. One signal is represented by the self-sequence alignment values and the other is represented by the relative frequency values of Cplus G letters.

Language: HTML - Size: 154 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/3D-Objective-Digital-Stains-local-frequency

A 3D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS uses the global frequency of symbols (A, T/U, C, G) from the input sequence to calculate the local frequency of these symbols from a sliding window.

Language: HTML - Size: 22.5 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/3D-Objective-Digital-Stains

A 3D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS is computed using the local frequency of the symbols from a sliding window. In the 3D version, the overlapping values (similar sliding windows) are represented by a gradient from black to red.

Language: HTML - Size: 19.5 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/2D-Objective-Digital-Stains

A 2D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS is computed using the local frequency of the symbols from a sliding window.

Language: HTML - Size: 15.6 KB - Last synced: about 13 hours ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

maxdemaio/DNA

🧬 Identify to whom a sequence of DNA belongs from a given database

Language: Python - Size: 146 KB - Last synced: about 14 hours ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

broadinstitute/gatk

Official code repository for GATK versions 4 and up

Language: Java - Size: 451 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 1,604 - Forks: 574

biopython/biopython

Official git repository for Biopython (originally converted from CVS)

Language: Python - Size: 67.5 MB - Last synced: about 2 hours ago - Pushed: about 20 hours ago - Stars: 4,171 - Forks: 1,713

rmzelle/dna-flip

Reverse, complement, and reverse complement conversions of DNA or RNA sequences

Language: HTML - Size: 10.7 KB - Last synced: about 21 hours ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

tzok/eltetrado

A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures

Language: Python - Size: 3.05 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 17 - Forks: 3

google/deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language: Python - Size: 503 MB - Last synced: about 20 hours ago - Pushed: about 1 month ago - Stars: 3,079 - Forks: 695

Arty40m/nskit

RNA/DNA secondary structure library for processing it as a graph, reading and writing

Language: Python - Size: 178 KB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 3 - Forks: 1

nextstrain/nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Language: TypeScript - Size: 57.4 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 199 - Forks: 57

bebop/poly

A Go package for engineering organisms.

Language: Go - Size: 12.9 MB - Last synced: about 17 hours ago - Pushed: 2 days ago - Stars: 649 - Forks: 68

novoalab/modPhred

modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data

Language: Python - Size: 47.9 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 13 - Forks: 1

galaxyproject/galaxy

Data intensive science for everyone.

Language: Python - Size: 616 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 1,315 - Forks: 961

MichaelSebero/GEDmatch-Admixture-Sorter

This python script sorts a population spreadsheet provided by GEDmatch.

Language: Python - Size: 24.4 KB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

BjornFJohansson/pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Language: Jupyter Notebook - Size: 47.5 MB - Last synced: about 3 hours ago - Pushed: about 24 hours ago - Stars: 153 - Forks: 40

Gagniuc/Visual-Sequence-Alignment-in-VB6

This highly visual and responsive VB6 application is an implementation of the global sequence alignment algorithm. It allows the modification of the alignment parameters (match, mismatch, gap), and it shows the pairwise alignment as well as the score matrix in real time.

Language: Visual Basic 6.0 - Size: 7.26 MB - Last synced: about 13 hours ago - Pushed: over 1 year ago - Stars: 8 - Forks: 2

spawaskar-cora/cora-docs

CoRA Docs

Language: HTML - Size: 491 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 36 - Forks: 5

marrink-lab/polyply_1.0

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

Language: Python - Size: 7.33 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 110 - Forks: 20

shashwat9kumar/RNA_Sequencing_And_Genome_Analysis

A project to sequence the RNA from actual error prone reads from a PCR process and then to analyze the sequenced protein sequence

Language: C++ - Size: 4.47 MB - Last synced: 6 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 2

yaoguangluo/ChromosomeDNA

《DNA元基催化与肽计算》 在进化计算中, 软件函数文件进行 DNA 语义元基索引编码的 PDE 新陈代谢优化方式, 是一种有效的进化方式.

Language: Java - Size: 670 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 7 - Forks: 2

mdshw5/pyfaidx

Efficient pythonic random access to fasta subsequences

Language: Python - Size: 11.7 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 440 - Forks: 73

gwirn/CONSiL

size and concentration calculation of DNA bands in an agarose gel

Language: Python - Size: 482 KB - Last synced: 8 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

Lattice-Automation/primers

A PCR primer tool for DNA assembly flows

Language: Python - Size: 70.3 KB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 22 - Forks: 6

aakashpadhiyar/streamlit_basics_eg-DNA-App

streamlit is an open-source app framework for Machine Learning and Data Science teams. Create beautiful data apps in hours, not weeks. All in pure Python

Language: Python - Size: 231 KB - Last synced: 8 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

mutalyzer/algebra

A Boolean Algebra for Genetic Variants

Language: Python - Size: 854 KB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 10 - Forks: 2

andikscript/react-native-custom

my creation on react native

Language: JavaScript - Size: 2.41 MB - Last synced: 9 days ago - Pushed: about 2 years ago - Stars: 16 - Forks: 0

cobilab/jarvis3

Efficient compression of biological data

Language: C - Size: 75.5 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 3 - Forks: 0

karma9874/DNA-Cipher-Script-CTF

A simple script to decode the genome DNA binary sequence (CTF Challenge)

Language: Python - Size: 78.1 KB - Last synced: about 7 hours ago - Pushed: over 3 years ago - Stars: 20 - Forks: 6

cgohlke/dnacurve

DNA curvature analysis

Language: Python - Size: 138 KB - Last synced: 6 days ago - Pushed: 8 months ago - Stars: 5 - Forks: 1

Gulshan-gaur/NAUniSeq

NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics

Language: Python - Size: 853 KB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 1 - Forks: 0

ropensci/restez

:sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R

Language: R - Size: 10 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 25 - Forks: 5

jkobject/pycub

A pipeline to do compute and inference using ML tools on codons and DNA

Language: Jupyter Notebook - Size: 1.76 GB - Last synced: 12 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

fomightez/sequencework

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Language: Python - Size: 3.57 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 22 - Forks: 4

paulsengroup/modle

High-performance stochastic modeling of DNA loop extrusion interactions

Language: C++ - Size: 67.9 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 16 - Forks: 1

vgteam/vg

tools for working with genome variation graphs

Language: C++ - Size: 138 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 1,055 - Forks: 189

lmdu/pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Language: C - Size: 9.37 MB - Last synced: 1 day ago - Pushed: 2 months ago - Stars: 238 - Forks: 19

anton083/VectorizedKmers.jl

Fast K-mer counting in Julia

Language: Julia - Size: 718 KB - Last synced: 8 days ago - Pushed: about 1 month ago - Stars: 9 - Forks: 0

qbicsoftware-archive/variantcalling

Repository for variant calling pipeline using FreeBayes

Language: Python - Size: 5.86 KB - Last synced: 14 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/variant-annotation-workflow

Workflow scripts of the variant annotation workflow

Language: Python - Size: 1.95 KB - Last synced: 14 days ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

qbicsoftware-archive/somatic-variantcalling-workflow

Workflow scripts for somatic variant calling workflow (Strelka)

Language: Python - Size: 1000 Bytes - Last synced: 14 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/qbic-workflow-indproteome

Workflow to create personalized protein references using FRED2.

Language: Python - Size: 14.6 KB - Last synced: 14 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/qbic-workflow-epitopeprediction

Epitope prediction workflow based on FRED.

Language: Python - Size: 2.93 KB - Last synced: 14 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/optitype-workflow

Language: Python - Size: 18.6 KB - Last synced: 14 days ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

qbicsoftware-archive/ngsqc

Quality Control on fastq files

Language: Python - Size: 4.88 KB - Last synced: 14 days ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/merge-NGSdata-workflow

Workflow scripts for merging NGS raw data (lanes)

Language: Python - Size: 1000 Bytes - Last synced: 14 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/epaa-workflow

Language: Python - Size: 24.4 KB - Last synced: 14 days ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

Dpbm/dna-quantum

RNA to DNA using quantum computing

Language: Jupyter Notebook - Size: 60.5 KB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0

instadeepai/nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Language: Python - Size: 4.05 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 377 - Forks: 45

AIRI-Institute/GENA_LM

GENA-LM is a transformer masked language model trained on human DNA sequence.

Language: Jupyter Notebook - Size: 28.5 MB - Last synced: 14 days ago - Pushed: 6 months ago - Stars: 146 - Forks: 13

urmi-21/orfipy

Fast and flexible ORF finder

Language: Python - Size: 5.3 MB - Last synced: 3 days ago - Pushed: over 2 years ago - Stars: 47 - Forks: 6

lorenzo-rovigatti/oxDNA

A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings

Language: C++ - Size: 48 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 36 - Forks: 26

rootstrap/ImputationGeneris Fork of asiadmitchell/ImputationGeneris 📦

DNA Imputation tool for Generis.

Language: R - Size: 5.56 MB - Last synced: 16 days ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

CoolCat467/Coding-For-Medicine-2020

This is a bunch of programs I created in the 2020 Intermediate Coding For Medicine Course. No Stealing.

Language: Python - Size: 85 KB - Last synced: 16 days ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

scholer/cadnano_staplestatter

Various tools for analyzing staple strands in DNA origami structures created with cadnano.

Language: Python - Size: 158 KB - Last synced: 16 days ago - Pushed: about 3 years ago - Stars: 3 - Forks: 1

jistr/seq2fasta

Converts one or more DNA bare sequence files (.seq) into one FASTA format file (.fas).

Language: Python - Size: 117 KB - Last synced: 16 days ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

ugeneunipro/ugene

UGENE is free open-source cross-platform bioinformatics software

Language: C++ - Size: 194 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 196 - Forks: 59

jslfree080/interpack

DNA FASTA encoder for compressing raw sequences into searchable binary format (extract nth subsequence using random access without index file)

Language: Rust - Size: 3.02 MB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 0

PacificBiosciences/hifihla

An HLA star-calling tool for PacBio HiFi data types

Size: 61.5 KB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 15 - Forks: 1

drboothtj/gcskewer

create GC skew plots from DNA sequences in python

Language: HTML - Size: 5.48 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 1

BioJulia/Bio.jl 📦

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Language: Julia - Size: 6.7 MB - Last synced: 18 days ago - Pushed: 8 months ago - Stars: 261 - Forks: 65

plashchynski/awesome-genetics

A curated list of awesome personal genomics software, libraries, and educational resources.

Size: 40 KB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 109 - Forks: 7

Lattice-Automation/seqviz

a JavaScript DNA, RNA, and protein sequence viewer

Language: TypeScript - Size: 112 MB - Last synced: 26 days ago - Pushed: 27 days ago - Stars: 206 - Forks: 49

google/nucleus

Python and C++ code for reading and writing genomics data.

Language: C++ - Size: 6.13 MB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 771 - Forks: 124

lightdock/lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Language: Python - Size: 93 MB - Last synced: 28 days ago - Pushed: 4 months ago - Stars: 259 - Forks: 33

wafflespeanut/nucleic-acid 📦

BWT, FM-index and bits vector for analyzing DNA sequence data.

Language: Rust - Size: 96.7 KB - Last synced: 5 days ago - Pushed: over 6 years ago - Stars: 17 - Forks: 3

dweb0/protein-translate

Translate nucleotide sequence (dna or rna) to protein.

Language: Rust - Size: 613 KB - Last synced: 23 days ago - Pushed: over 4 years ago - Stars: 5 - Forks: 0

samtools/htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

Language: Java - Size: 109 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 271 - Forks: 244

apriha/lineage

tools for genetic genealogy and the analysis of consumer DNA test results

Language: Python - Size: 1.05 MB - Last synced: 27 days ago - Pushed: about 1 month ago - Stars: 140 - Forks: 25

FelixKrueger/Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Language: HTML - Size: 38 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 356 - Forks: 102

apriha/snps

tools for reading, writing, merging, and remapping SNPs

Language: Python - Size: 1.95 MB - Last synced: 20 days ago - Pushed: about 2 months ago - Stars: 88 - Forks: 18

IQTLabs/squiggle 📦

📈 DNA Sequence Visualization for Humans

Language: Python - Size: 4.21 MB - Last synced: 4 days ago - Pushed: almost 3 years ago - Stars: 38 - Forks: 8

E01D/Digital-Biological-Architecture

The architecture and implementation details of a digital cell implemented in C#.

Size: 112 KB - Last synced: about 1 month ago - Pushed: about 6 years ago - Stars: 5 - Forks: 0

arms-mbon/data_workspace

This repo is the working area for ARMS-MBON event and omics data: data are collected, harvested, combined, reformatted

Language: Python - Size: 39.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 1

ggirelli/iFISH-probe-design 📦

iFISH Probe Design: a Python3 package to build iFISH probes.

Language: Python - Size: 9.88 MB - Last synced: 1 day ago - Pushed: about 2 years ago - Stars: 8 - Forks: 5

OTPiccolo/hcat-gui

HCAT GUI is a visual tool to analyze and manipulate DNA sequence data.

Language: Java - Size: 780 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

OTPiccolo/hcat-cli

HCAT CLI is a command line interface tool to analyze DNA sequence data.

Language: Java - Size: 300 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

VerisimilitudeX/DNAnalyzer

Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools

Language: Java - Size: 188 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 125 - Forks: 55

liberu-genealogy/php-dna

Language: PHP - Size: 832 KB - Last synced: 13 days ago - Pushed: about 1 month ago - Stars: 31 - Forks: 23

gear-genomics/bgen

Barcode Generator

Language: JavaScript - Size: 459 KB - Last synced: 18 days ago - Pushed: 9 months ago - Stars: 3 - Forks: 2

gear-genomics/bistro

bistro: barcode distribution

Language: HTML - Size: 198 KB - Last synced: 18 days ago - Pushed: 9 months ago - Stars: 2 - Forks: 2

cslarsen/arv

A fast 23andMe DNA parser and inferrer for Python

Language: C++ - Size: 325 KB - Last synced: 2 days ago - Pushed: over 4 years ago - Stars: 114 - Forks: 5

yotamnahum/DNA-Data-Storage

Single Read Reconstruction for DNA Data Storage Using Transformers (official implementation)

Language: Python - Size: 14.4 MB - Last synced: 10 days ago - Pushed: 4 months ago - Stars: 3 - Forks: 1

cobilab/geco2

An improved compression tool for DNA sequences

Language: C - Size: 307 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 2

RosettaCommons/PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Language: Jupyter Notebook - Size: 353 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 417 - Forks: 138

eyss/h-wiki-back 📦

DNA code for H-Wiki, a holochain-powered wiki for groups and communities

Language: Rust - Size: 62.2 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 20 - Forks: 2

songlab-cal/gpn

Genomic Pre-trained Network

Language: Jupyter Notebook - Size: 52.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 151 - Forks: 19

AstraBert/VirBiCla

A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.

Language: Python - Size: 49.1 MB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 1 - Forks: 0

JinsenLi/deepDNAshape

A method to predict DNA shape features considering farther flanking region.

Language: Python - Size: 58.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 0

google/deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

Size: 20.5 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 75 - Forks: 4

lvn3668/findNmerfrequencies

C++ code to calculate nmer frequencies (n= 1 to 6) and write out to file

Language: C++ - Size: 17.6 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0