k96nb01/immunogenetr_package

An R library for HLA informatics

Language: R - Size: 7.87 MB - Last synced at: about 22 hours ago - Pushed at: 1 day ago - Stars: 2 - Forks: 0

MannLabs/alphapeptdeep

Deep learning framework for proteomics

Language: Jupyter Notebook - Size: 29.6 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 126 - Forks: 22

slowkow/awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

Size: 575 KB - Last synced at: 13 days ago - Pushed at: 24 days ago - Stars: 221 - Forks: 30

sanjaysgk/HLA-PepClust

Peptides motif search tool and Source protein mappers

Language: HTML - Size: 148 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0

ANHIG/IMGTHLA

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

Language: Parrot - Size: 3.06 GB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 224 - Forks: 61

nf-core/hlatyping

Precision HLA typing from next-generation sequencing data

Language: Nextflow - Size: 39.4 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 66 - Forks: 31

solidi/hl-mods

Modifications for Half-Life on GoldSrc. Includes active development of Cold Ice Remastered.

Language: C++ - Size: 396 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 17 - Forks: 1

nmdp-bioinformatics/py-ard

HLA ARD Reduction in Python

Language: Python - Size: 2.27 MB - Last synced at: 23 days ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 14

distributedsimulationtools/coreDSUnreal_Sample_AutomaticMode

Sample project to showcase the coreDS Unreal automatic mode

Language: Lua - Size: 723 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

distributedsimulationtools/coreDSUnreal_Sample_Cpp

A C++ project example using coreDS Unreal

Language: C++ - Size: 807 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

tnaccarato/Vis-PheWAS

A visualisation platform for analysing disease-allele associations using HLA-PheWAS data

Language: Python - Size: 33.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

PacificBiosciences/hifihla

An HLA star-calling tool for PacBio HiFi data types

Size: 61.5 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 22 - Forks: 2

distributedsimulationtools/coreDSUnreal_Sample_FirstPersonShooterDemo

This is a Sample project to be used with coreDS Unreal and the Unreal Engine 4.

Language: Lua - Size: 731 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 7 - Forks: 0

MICS-Lab/pelc

Python Eplet Load Calculator

Language: Python - Size: 2.25 MB - Last synced at: 23 days ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0

slowkow/allelefrequencies

📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.

Language: Python - Size: 24.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 20 - Forks: 3

slowkow/hlabud

🐶 hlabud: HLA genotype analysis in R

Language: R - Size: 26.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 0

Androthi/HIDE

IDE for the HLA language, written in HLA. Self compiles using HIDE

Size: 1.64 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 19 - Forks: 1

zhengxwen/HIBAG

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

Language: C++ - Size: 39.9 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 30 - Forks: 7

liturner/tt-ieee1516

IEEE 1516 (HLA) C++ Implementation

Language: C++ - Size: 341 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

BGI-flexlab/SOAPTyping

HLA typing for Sanger Based Test

Language: C++ - Size: 18.6 MB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 17 - Forks: 7

Terano24/OPSI-Project

Prediksi Peptida Imunogenik untuk Imunitas Sel-T sebagai Epitop Potensial Targeted-Vaccine dan Targeted-Immunotherapy pada Kanker Paru Berbasis Deep Learning Menggunakan Algoritma Convolutional Neural Network (CNN)

Language: Jupyter Notebook - Size: 2.15 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

Genentech/midasHLA

R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.

Language: R - Size: 13.3 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 8

WansonChoi/HATK

A collection of modules to process and analyze IMGT-HLA sequences.

Language: Parrot - Size: 198 MB - Last synced at: 7 months ago - Pushed at: over 2 years ago - Stars: 28 - Forks: 9

nmdp-bioinformatics/pyHML

Python package for working with HML

Language: Python - Size: 6.72 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 6

rivas-lab/covid19

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

Language: Jupyter Notebook - Size: 6.18 MB - Last synced at: 2 months ago - Pushed at: about 5 years ago - Stars: 43 - Forks: 7

zhengxwen/HIBAG.gpu

GPU-based implementation for the HLA genotype imputation method (HIBAG)

Language: C++ - Size: 285 KB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

ikmb/amino_acid_encoding_deep_learning_applications

The repository contains all the code for the paper amino acid encoding using deep learning application

Language: Python - Size: 28.4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 18 - Forks: 5

IVCTool/IVCT_Framework

For IVCT Framework Developers. Core System for the IVCT (Integration, Verification and Certification Tool) for HLA Federates

Language: Java - Size: 12.6 MB - Last synced at: 5 months ago - Pushed at: 11 months ago - Stars: 16 - Forks: 4

SimIntToolkit/cpswt-core

Foundational codebase with support for java federates

Language: Java - Size: 2.23 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 3

pbashyal-nmdp/py-ard Fork of nmdp-bioinformatics/py-ard

HLA ARD reduction in Python

Language: Python - Size: 848 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

adeschen/docker-arcasHLA

Docker image for arcasHLA software

Language: Dockerfile - Size: 8.79 KB - Last synced at: 2 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

Kingsford-Group/kourami

Kourami: Graph-guided assembly for HLA alleles

Language: Java - Size: 19.2 MB - Last synced at: 8 months ago - Pushed at: almost 6 years ago - Stars: 35 - Forks: 12

ramonamerong/hladownload

A tool for downloading HLA alleles, epitopes and frequencies

Language: Python - Size: 1.54 MB - Last synced at: 1 day ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 1

kaeaton/GSG-Kotlin

A search tool for GFE names of HLA and KIR genes.

Language: Kotlin - Size: 486 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

linnil1/HLA_collections

A script to run HLA typing tools from next generation sequencing data

Language: Python - Size: 292 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 1

crazy-24/snvrel

Launcher с No VR эмулятором для Half-Life: Alyx и SteamVR

Size: 0 Bytes - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

keiken-shin/hla_unity_plugin

HLA Plugin for Unity Simulation using Pitch RTI - (Boilerplate Example)

Language: C++ - Size: 3.15 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

Androthi/Arayna

Scripting engine and GUI front end for writing and playing interactive fiction style games

Language: AMPL - Size: 218 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Androthi/hidelib

My custom HLA library used with the HIDE IDE. Has useful configuration and buffer procedures.

Size: 117 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

immunogenomics/scHLApers

Code to run the scHLApers pipeline for personalized single-cell HLA quantification

Language: Jupyter Notebook - Size: 7.94 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 1

otopcu/Racon

RACoN - RTI abstraction component for MS.NET (RACoN)

Language: C++ - Size: 4.88 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 9

MannLabs/PeptDeep-HLA

DL model to predict HLA peptide presentation

Language: Jupyter Notebook - Size: 11.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 5

vectorgrp/OpenRTI Fork of onox/OpenRTI 📦

Fork of OpenRTI with several extensions that are not part of IEEE 1516e. For original OpenRTI see SourceForge.

Language: C++ - Size: 4.79 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 3

GfellerLab/MoDec

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

Language: R - Size: 11.3 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 0

GfellerLab/MixMHC2pred

HLA-II ligand predictor.

Language: C++ - Size: 20.9 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 27 - Forks: 10

dyohanne/HLAXPress

HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.

Language: R - Size: 69 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

chanwkimlab/GAT

GAT (Generic Genome-Wide Association Tool)

Language: Python - Size: 3.92 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

BerkhanBerkdemir/docker-hla

HLA on Docker

Language: Dockerfile - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

Konrad-Ziarko/MTSK2

University project for HLA real time simulation of a bank

Language: Java - Size: 2.35 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

sethsh7/hla-prs-toolkit

Toolkit to aid generation of advanced Polygenic Risk Scores (PRS) including SNP-allele tagging and interaction models, especially in HLA. Developed and maintained by Seth Sharp ([email protected]).

Language: Python - Size: 935 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 8 - Forks: 4

jfnavarro/hla_pipeline

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

Language: Python - Size: 1.55 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 8 - Forks: 2

ikmb/iptoolkit

A pythonic library for analysing immunopeptidomic experiments

Language: Python - Size: 177 MB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 2

nmdp-bioinformatics/seq-ann

Python package for doing fast and accurate sequence annotation

Language: Python - Size: 22.4 MB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 8

milochen0418/ieee-1516-rti

By IEEE 1516 Standard, To design and lmplement one distributed system for simulator purpose.

Language: C++ - Size: 2.68 MB - Last synced at: about 1 month ago - Pushed at: over 7 years ago - Stars: 8 - Forks: 3

raghavagps/hlancpred

A method for predicting promiscuous non-classical HLA binding sites in an antigen

Language: Python - Size: 20.6 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

chuanfuyap/hla-analysis-py

Haplotype analysis tools for genomics studies

Language: Python - Size: 67.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

nmdp-bioinformatics/imgt_biosqldb

The IMGT/HLA sequence data persisted in a BioSQL database

Language: Python - Size: 31.3 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 3

nmdp-bioinformatics/hla-reporting-ig

FHIR Implementation Guide for HLA reporting

Language: HTML - Size: 90.1 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

nmdp-bioinformatics/flow-OptiType

Use nextflow to run BAM files through OptiType

Size: 22.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 1

nmdp-bioinformatics/act-service

Allele Calling Tool (ACT)

Language: Python - Size: 193 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 5

SintolRTOS/PSintolSDK

it's the sdk for python with linking rtosnode

Language: C++ - Size: 4.3 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

SintolRTOS/CSintolSDK

CSintolSDK is the C++SDK for link and inveraction to SintolRTOSNode

Language: C++ - Size: 55.9 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

Neoxio/HlaSharp.API

The C# API implemented in HlaSharp for HLA 1516 Evolved.

Language: C# - Size: 27.3 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

cvisb/cvisb_data

Data portal and API for Center for Viral Systems Biology (CViSB) data

Language: TypeScript - Size: 53.1 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

jason-weirather/hla-polysolver

Fork of the Polysolver project

Language: Perl - Size: 22.3 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 25 - Forks: 18

onox/OpenRTI

Mirror of OpenRTI on SourceForge. Do not create PR's. Instead send patches or git pull commands to the mailing list on SF.

Language: C++ - Size: 2.37 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 45 - Forks: 29

miazga-git/Computer-Simulation-Project-Sem-VIII

Language: Java - Size: 3.79 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ikmb/PIA-inference

the peptide immune annotator pipeline (PIA-P) a collection of bash and Python scripts used running peptide HLA interaction from a variety of inputs

Language: Python - Size: 14.8 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

ikmb/OmLiT

A Rust accelerated library for annotation and preparing multi-omics data for training deep learning models

Language: Rust - Size: 6.66 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

ToolTech/Distributed_Domain_Demo

A demo of GizmoDistribution

Size: 26.8 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 3

mercywilliams160896/Vaccinia-HLA-Associations

Comprehensive repository for HLA associations with Smallpox vaccine elicited immune responses

Size: 141 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

irunonayran/c4counter

Language: Python - Size: 13.7 KB - Last synced at: 3 days ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

thinkvivek/IMGT-HLA-Dataset

Download aligned HLA gene sequences from IMGT website

Language: Python - Size: 5.85 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

chanwkimlab/MHC_Kor_Assoc

Phenome-wide association study of the major histocompatibility complex region in the Korean population identifies novel association signals

Language: Jupyter Notebook - Size: 29.2 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/hlatyping-workflow Fork of nf-core/hlatyping

Precision HLA typing from next-generation sequencing data

Language: Nextflow - Size: 36.2 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

k-eaton/PGroups

An HLA alleles aggregator.

Language: Java - Size: 14.8 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

mhalagan/netMHC-spark Fork of nmdp-bioinformatics/netMHC-spark

netMHC Apache Spark CLI

Language: Scala - Size: 9.77 KB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

nmdp-bioinformatics/netMHC-spark

netMHC Apache Spark CLI

Language: Scala - Size: 11.7 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 2

tjvdmolen/jcerti-repo

Mavenized build and repo for jcerti

Size: 14 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0