Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: t-cell
antigenomics/vdjdb-db
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
Language: Groovy - Size: 14.2 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 127 - Forks: 27
BerkeleyLab/matcha
T-cell motility simulator
Language: Fortran - Size: 2.72 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 3 - Forks: 1
antigenomics/vdjmatch
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
Language: Groovy - Size: 5.38 MB - Last synced: 20 days ago - Pushed: over 5 years ago - Stars: 36 - Forks: 7
mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
Language: Groovy - Size: 31.6 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 126 - Forks: 40
Menno-Meijer/T-cell-subsets-neural-network
This neural-network can predict the effector/memory T cell (T lymphocyte) subset of single cells based on flow cytometry data with 99,22% accuracy.
Language: Jupyter Notebook - Size: 2.19 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0
milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Language: Kotlin - Size: 46.1 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 290 - Forks: 81
mattfemia/iedb-python
Python SDK for Immune Epitope Database (IEDB) Analysis Tools API
Language: Python - Size: 7.81 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 3 - Forks: 1
GfellerLab/MixMHC2pred
HLA-II ligand predictor.
Language: C++ - Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 27 - Forks: 10
eisascience/Wong-Gold-Lewinsohn
TCR Enrichment Analysis (TEA) Webtool
Language: R - Size: 826 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
mikessh/migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Language: Groovy - Size: 14.6 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 49 - Forks: 20
antigenomics/segment-parser
A parser for immune receptor gene data, mainly IMGT references
Language: Groovy - Size: 784 KB - Last synced: 20 days ago - Pushed: almost 5 years ago - Stars: 3 - Forks: 1
immunomind/covid19
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
Size: 470 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 41 - Forks: 4
