GitHub topics: ngs-data

Repositories

seqan/needle

A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

Language: C++ - Size: 9.3 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 14 - Forks: 6

BU-ISCIII/iskylims

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Language: Python - Size: 22.5 MB - Last synced at: 13 days ago - Pushed at: 29 days ago - Stars: 75 - Forks: 39

BU-ISCIII/iSkyLIMS_core 📦

iSkyLIMS home website for information and links purposes

Language: CSS - Size: 4.29 MB - Last synced at: 13 days ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

BU-ISCIII/iSkyLIMS_drylab 📦

Language: Python - Size: 4.97 MB - Last synced at: 13 days ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 5

BU-ISCIII/iSkyLIMS_wetlab 📦

This repository contains a internal web page for sequencing runs management for NextSeq and MiSeq Illumina machines.

Language: Python - Size: 8.2 MB - Last synced at: 13 days ago - Pushed at: almost 4 years ago - Stars: 5 - Forks: 2

TC-Hewitt/Misc_NGS

various tools that help with deep sequencing analysis

Language: Python - Size: 54.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Runsheng/mitovar

Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.

Language: Python - Size: 2.68 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 2

FSUgenomics/SRSFseq

SRSF shape analysis framework for sequencing data

Language: R - Size: 3.94 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2

Genometric/Di4

1D intervals incremental inverted index

Language: C# - Size: 13.8 MB - Last synced at: 2 months ago - Pushed at: almost 6 years ago - Stars: 3 - Forks: 2

WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.

Language: Perl - Size: 2.62 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 3