GitHub topics: ngstools
whl-usc/cris_tools
A collection of various tools useful for the deep analysis of data generated via the CRSSANT/rna2d3d pipeline.
Language: Python - Size: 1.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
fritzsedlazeck/SVCollector
Method to optimally select samples for validation and resequencing
Language: C++ - Size: 1.98 MB - Last synced at: 12 days ago - Pushed at: about 4 years ago - Stars: 27 - Forks: 5
khuang28jhu/bs3
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Language: Python - Size: 38.3 MB - Last synced at: 12 days ago - Pushed at: almost 6 years ago - Stars: 27 - Forks: 13
akiomiyao/ped
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
Language: Perl - Size: 12.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 2
TimoLassmann/tagdust
A tool to extract mappable reads from various library preparation protocols.
Language: C - Size: 17.3 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 0
chgibb/unMappedCIGARFragments
Extract unmapped read fragments from a sequence alignment map by evaluating it's concise idiosyncratic gapped alignment reports (CIGARs)
Language: TypeScript - Size: 577 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
apietrelli/myVCF
myVCF: a web-based platform for target and exome mutations data management
Language: Python - Size: 21.4 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 18 - Forks: 13
ALAPY/alapy_arc
ALAPY COMPRESSOR: FASTQ lossless compressor
Size: 4.94 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 9 - Forks: 1
rodriguez-salarichs/vecscreen_extract
Program extracts a valuable information from an output vecscreen file
Language: Roff - Size: 203 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
FSUgenomics/SRSFseq
SRSF shape analysis framework for sequencing data
Language: R - Size: 3.94 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2
rptashkin/facets2n
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
Language: R - Size: 240 MB - Last synced at: 21 days ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 4
smangul1/ec
This project includes simulated and 'golden standard' datasets, software and scripts that we used to benchmark error correction tools
Language: Python - Size: 305 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 3
tiagoantonio/woland
WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.
Language: Perl - Size: 2.62 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 3
MBeyens/pyAmpli
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
Language: Python - Size: 78.1 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
SchulzLab/ORNA
Fast in-silico normalization algorithm for NGS data
Language: C++ - Size: 24.5 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 21 - Forks: 4
kpatel427/bash
useful bash one-liners and scripts
Language: Shell - Size: 12.7 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1
cchrysostomou/seqtables
Tools for analyzing NGS sequence data and aligned protein sequences
Language: Python - Size: 92.4 MB - Last synced at: about 4 hours ago - Pushed at: almost 4 years ago - Stars: 5 - Forks: 2
simras/CLAP
CLAP - A pipeline used to process CLIP-seq (specifically PAR-CLIP, HITS-CLIP and iCLIP) data.
Language: Perl - Size: 3.92 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
ddiez/ngstools
Miscellaneous tools for the analysis of NGS data
Language: R - Size: 456 KB - Last synced at: 12 months ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
