GitHub topics: clip-seq
datirium/workflows
CWL based Bioinformatics Workflows
Language: Common Workflow Language - Size: 3.02 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 16 - Forks: 16
nf-core/clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
Language: Nextflow - Size: 39.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 21 - Forks: 30
y9c/PIPE-CLIP Fork of QBRC/PIPE-CLIP
Optimized version of PIPE-CLIP tool (bug fixed)
Language: Python - Size: 4.16 MB - Last synced at: 7 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1
SoniaRuiz/RBP_RNA_interactions
Shiny App for the visualisation of RBP-RNA interactions supported by the binding sites of RBPs derived from CLIP-seq data (ENCORI database).
Language: R - Size: 34.9 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Xinglab/CLAM
CLIP-seq Analysis of Multi-mapped reads
Language: Python - Size: 1.05 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 25 - Forks: 6
BackofenLab/CLIPcontext
Extract CLIP-seq binding regions with both genomic and transcript context
Language: Python - Size: 1.48 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
ShangZhang/clipipe
CLIPipe(CLIP-seq Pipeline) is an integrated pipeline for analyzing CLIP sequencing data.
Language: HTML - Size: 246 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 3
slebedeva/CLIP_mapping
a pipeline to map CLIP-seq data
Language: Python - Size: 7.81 KB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0
simras/CLAP
CLAP - A pipeline used to process CLIP-seq (specifically PAR-CLIP, HITS-CLIP and iCLIP) data.
Language: Perl - Size: 3.92 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
