Ecosyste.ms: Repos

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GitHub topics: amplicons

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

Language: Python - Size: 2.79 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 18 - Forks: 8

Classify output of AmpliconArchitect to detect types of focal amplifications present

Language: Python - Size: 416 KB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 13 - Forks: 11

Language: R - Size: 45.9 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

Language: Python - Size: 18.3 MB - Last synced: 21 days ago - Pushed: 6 months ago - Stars: 35 - Forks: 14

Visualizing taxa of different amplicon primer sets

Language: Jupyter Notebook - Size: 26.5 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

Language: Perl - Size: 20 MB - Last synced: 7 months ago - Pushed: over 6 years ago - Stars: 4 - Forks: 0

Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.

Language: Python - Size: 4.64 MB - Last synced: 23 days ago - Pushed: 4 months ago - Stars: 2 - Forks: 0

pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data

Language: Python - Size: 78.1 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

A pipeline for assembling and annotation of vectors

Language: Nextflow - Size: 18.9 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

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