GitHub topics: bisulfite
semenko/serpent-methylation-pipeline
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
Language: Python - Size: 12 MB - Last synced at: about 22 hours ago - Pushed at: about 23 hours ago - Stars: 8 - Forks: 4
andrewdavidsmith/transferase
The transferase system for retrieving methylome data from methbase
Language: C++ - Size: 3.51 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 2 - Forks: 0
khuang28jhu/bs3
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Language: Python - Size: 38.3 MB - Last synced at: 17 days ago - Pushed at: almost 6 years ago - Stars: 27 - Forks: 13
dpryan79/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
Language: C - Size: 7.73 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 151 - Forks: 41
mdraminski/CytoMeth
CytoMeth tool compiles a set of open source software named in the Roche pipeline guidelines to perform SeqCap Epi data analysis.
Language: R - Size: 45.5 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1
tadKeys/tabsat
Targeted Amplicon Bisulfite Sequencing Analysis Tool
Language: Perl - Size: 470 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 11 - Forks: 3
sing-group/bicycle
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
Language: Java - Size: 300 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 1
BioInfoTools/BSVF
Bisulfite Sequencing Virus integration Finder
Language: C - Size: 1.02 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 4
