GitHub topics: em-seq
nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Language: Nextflow - Size: 24.2 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 168 - Forks: 157
andreyhgl/PFOS-MCF10A-methylome
Code to reproduce the results in Pierozan et al, 2024, see link below:
Language: R - Size: 82 KB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 1 - Forks: 0
andreyhgl/methylome-analysis
Pipeline for differential DNA methylation analysis
Language: R - Size: 4.33 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
ChaorongC/mesa_cfdna
A flexible and sensitive method for capturing and integrating multimodal epigenetic information from cell-free DNA (cfDNA) using a single experimental assay.
Language: Jupyter Notebook - Size: 196 KB - Last synced at: 19 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
semenko/serpent-methylation-pipeline
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
Language: Python - Size: 12 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 8 - Forks: 4
ben-laufer/DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Language: R - Size: 4.62 MB - Last synced at: 8 months ago - Pushed at: almost 2 years ago - Stars: 39 - Forks: 23
seb-mueller/snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
Language: Python - Size: 1.06 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0
labbcb/methseq 📦
Automation tool for high-throughput sequencing DNA methylation data
Language: wdl - Size: 60.5 KB - Last synced at: 4 days ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
