GitHub topics: hla-typing

Repositories

k96nb01/immunogenetr_package

An R library for HLA informatics

Language: R - Size: 7.88 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 2 - Forks: 0

nf-core/hlatyping

Precision HLA typing from next-generation sequencing data

Language: Nextflow - Size: 39.4 MB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 67 - Forks: 32

Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.

Language: F* - Size: 595 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 20 - Forks: 0

slowkow/awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

Size: 575 KB - Last synced at: 29 days ago - Pushed at: about 2 months ago - Stars: 222 - Forks: 30

sanjaysgk/HLA-PepClust

Peptides motif search tool and Source protein mappers

Language: HTML - Size: 148 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

svm-zhang/mhcflow

mhcflow: Modern style HLA typing for class I and II alleles

Language: Python - Size: 3.41 MB - Last synced at: 19 days ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

svm-zhang/mhctyper

MHC class I and II typing.

Language: Python - Size: 819 KB - Last synced at: 13 days ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

PacificBiosciences/hifihla

An HLA star-calling tool for PacBio HiFi data types

Size: 61.5 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 22 - Forks: 2

BGI-flexlab/SOAPTyping

HLA typing for Sanger Based Test

Language: C++ - Size: 18.6 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 17 - Forks: 7

OpenOmics/genome-seek

Clinical Whole Genome and Exome Sequencing Pipeline

Language: Python - Size: 849 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 18 - Forks: 11

nmdp-bioinformatics/pyHML

Python package for working with HML

Language: Python - Size: 6.72 MB - Last synced at: 9 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 6

svm-zhang/hla_benchmark

HLA benchmark study using polysolverMod on 1000 genome data

Language: Python - Size: 272 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

oicr-gsi/hlavbseq

workflow wraps HLA-VBSeq, a tool for estimating the most prevalent HLA types in a sample

Language: WDL - Size: 38.1 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

oicr-gsi/hlaminer

wrapper workflow for BCGSC tool HLAminer

Language: WDL - Size: 34.2 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

pbashyal-nmdp/py-ard Fork of nmdp-bioinformatics/py-ard

HLA ARD reduction in Python

Language: Python - Size: 848 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

deepomicslab/SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

Language: C++ - Size: 156 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 22 - Forks: 9

adeschen/docker-arcasHLA

Docker image for arcasHLA software

Language: Dockerfile - Size: 8.79 KB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

BiomedicalSciences/learning-git

Language: HTML - Size: 5.86 KB - Last synced at: 12 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

Kingsford-Group/kourami

Kourami: Graph-guided assembly for HLA alleles

Language: Java - Size: 19.2 MB - Last synced at: 9 months ago - Pushed at: about 6 years ago - Stars: 35 - Forks: 12

NCBI-Hackathons/HLAClustRView

R package specialized in HLA typing clustering and visualization based on specific similarity metrics

Language: R - Size: 823 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 12 - Forks: 10

pyc1216/hlaloh-pipeline

hla-typing by optitype & polysolver , detect loh by lohhla.

Language: R - Size: 6.39 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

TRON-Bioinformatics/tronflow-hla-hd

A Nextflow workflow for HLA typing using HLA-HD

Language: Nextflow - Size: 14.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

linnil1/HLA_collections

A script to run HLA typing tools from next generation sequencing data

Language: Python - Size: 292 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 1

dyohanne/HLAXPress

HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.

Language: R - Size: 69 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0

Chelysheva/RNA2HLA

RNA2HLA is a QC tool performing study-wide HLA typing for RNA-seq data (paired on single-end) and thereby identifying the samples from the common source.

Language: Python - Size: 1.89 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 2