GitHub topics: allele-specific-expression
shiquan/Yano
An R package to perform Spatial dissimilarity analysis in single cells
Language: C - Size: 10.2 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 0
autosome-ru/MixALime
Mixture Models for Allelic Imbalance Estimation
Language: Python - Size: 33.6 MB - Last synced at: 19 days ago - Pushed at: 3 months ago - Stars: 9 - Forks: 1
Federico77z/aScan
aScan is a software tool for the determination of allele-specific-expression at the single individual level from matched RNA-Seq and genomic data.
Language: C++ - Size: 89.1 MB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 2
bcgsc/IMPALA
Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations
Language: R - Size: 20 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
sbresnahan/AST-tutorial
This tutorial demonstrates best practices for processing whole genome sequence (WGS) and mRNA sequencing (mRNA-seq) reads for allele-specific transcriptomics analysis.
Language: HTML - Size: 1.97 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
p4rkerw/Muto_Wilson_NComm_2020
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
Language: R - Size: 3.96 MB - Last synced at: 10 months ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 7
aryarm/as_analysis
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
Language: R - Size: 245 KB - Last synced at: 3 months ago - Pushed at: almost 4 years ago - Stars: 10 - Forks: 9
churchill-lab/emase-zero
C++ Implementation of EMASE
Language: C++ - Size: 378 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 2
dyohanne/HLAXPress
HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.
Language: R - Size: 69 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0
gimelbrantlab/ASE
early version of (Pipeline for detection of differential allelic imbalance from RNA-seq)
Language: HTML - Size: 13 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 5
sbresnahan/Galbraith-2016-PNAS-ASE-replication
Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020
Language: HTML - Size: 25.7 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
aryarm/str_ase
Allele-specific expression (ASE) for short tandem repeats (STRs)
Language: Python - Size: 106 KB - Last synced at: 4 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0