GitHub / deepomicslab / SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
JSON API: http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/deepomicslab%2FSpecHLA
PURL: pkg:github/deepomicslab/SpecHLA
Stars: 22
Forks: 9
Open issues: 6
License: mit
Language: C++
Size: 156 MB
Dependencies parsed at: Pending
Created at: about 4 years ago
Updated at: about 1 year ago
Pushed at: about 1 year ago
Last synced at: about 1 year ago
Topics: allelic-imbalance, cancer, genotype-frequency, haplotype, hla-sequence, hla-typing, human-leukocyte-antigens, immunity, local-assembly, loh, loss-of-heterozygosity, nanopore, pacbio-data, phase, reads-binning