Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: genotype-frequency
deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
Language: C++ - Size: 156 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 22 - Forks: 9
wshuai294/PStrain
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
Language: Shell - Size: 98.4 MB - Last synced: 30 days ago - Pushed: 30 days ago - Stars: 8 - Forks: 2
