GitHub topics: metagenomics-toolkit
linsalrob/atavide_lite
A simpler version of atavide that relies only on slurm or PBS scripts. Some of the settings are specific for our compute resources
Language: Python - Size: 328 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 3 - Forks: 1
omics-lab/VirusTaxo
VirusTaxo: Taxonomic classification of viruses from sequence
Language: Python - Size: 231 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 1
EBI-Metagenomics/emg-toolkit
MGnify API toolkit
Language: Python - Size: 312 KB - Last synced at: 26 days ago - Pushed at: 5 months ago - Stars: 20 - Forks: 4
Dreycey/PhageScanner
A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.
Language: Jupyter Notebook - Size: 49.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 0
codecreatede/go-metagenomics-deep
golang complete metagenomics analysis long reads
Language: Go - Size: 1000 Bytes - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
wshuai294/PStrain
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
Language: Shell - Size: 98.4 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 2
evanroyrees/Automappa
An interactive interface for exploration of highly complex metagenomes
Language: Python - Size: 2.86 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 3
sablokgaurav/metapanran
MetaPanRan bring togthers Roary, PEPPAN, Pirate and PanROO for the comparative analysis of metagenomes and performs indepth analysis on evolutionary scales
Language: R - Size: 123 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
GudaLab/StrainIQ
StrainIQ is an n-gram based method to identify and quantify microbial communities in metagenomics samples.
Language: Python - Size: 25.4 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
new-atlantis-labs/Living-Oceans
🌊 Robust workflows for gathering data about your local ocean.
Language: Jupyter Notebook - Size: 15.4 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 11 - Forks: 1
Robaina/MetaTag
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
Language: Python - Size: 70.3 MB - Last synced at: 3 days ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
linsalrob/atavide
Atavistic processing of metagenomics data.
Language: Python - Size: 107 KB - Last synced at: 3 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 2